View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4901_high_3 (Length: 287)
Name: NF4901_high_3
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4901_high_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 238994 - 239262
Alignment:
| Q |
19 |
atatacatatgtacaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtatttatttaagtatgtatcaattaacattatgctttcatta |
118 |
Q |
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| T |
238994 |
atatacatatgtacaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtatttatttaagtatgtatcaattaacattatgctttcatta |
239093 |
T |
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| Q |
119 |
gtaaaattaaaaaataataattaatttaacttgcagatcaacattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttaccta |
218 |
Q |
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| T |
239094 |
gtaaaattaaaaaataataattaatttaacttgcagatcaacattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttaccta |
239193 |
T |
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| Q |
219 |
gtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttctcctcatt |
287 |
Q |
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| T |
239194 |
gtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttctcctcatt |
239262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 225115 - 225241
Alignment:
| Q |
157 |
caacattttaccgtatatacaagaagaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgc |
256 |
Q |
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| T |
225115 |
caacattttaccggatctacaagaaaaaatcaacagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgc |
225214 |
T |
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| Q |
257 |
attgctcaaaaaagatgcttttctcct |
283 |
Q |
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| T |
225215 |
attcctcaaaaaagatgaatttctcct |
225241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 224965 - 225013
Alignment:
| Q |
31 |
acaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtat |
79 |
Q |
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| T |
224965 |
acaggtaatgtcatttccttcatggtatttttggctccaatgtaagtat |
225013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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