View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4901_low_1 (Length: 386)
Name: NF4901_low_1
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4901_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 7184293 - 7184653
Alignment:
| Q |
11 |
cacagaacggatagaatttgacaaaagcaaataatgcagattccacaagtattcaagccatgctacagatgactgtttgcagttgaaagatgtcattgag |
110 |
Q |
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| T |
7184293 |
cacagaacggatagaatttgacaaaagcaaataatgcagattccaccagtattcaagccatgctacagatgactgtttgcagttgaaagatgtcattgag |
7184392 |
T |
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| Q |
111 |
tatttgatctagggaggggaagttatttgatctagatgttatgccaagtgattagtacgtttgtctctaagaaactagttggagattctaggtagattac |
210 |
Q |
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| T |
7184393 |
tatttgatctagggaggggaagttatttgatctagatgttatgccaagtgattagtacgtttgtctctaagaaactagttggagattctaggtagattac |
7184492 |
T |
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| Q |
211 |
tgtacactcaatgccattactgttaaacagatttcccattt---caggcatttaaaatccattatgagcgcgcttttctagccttatttgcaccgaatct |
307 |
Q |
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| T |
7184493 |
tgtacactcaatgccattactgttaaacagatttcccatttcagcaggcatttaaaatccattatgagcgcgcttttctagccttatttgcaccgaatct |
7184592 |
T |
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| Q |
308 |
tggtgtatatcctctctctaaaagaccatttgcaacgctggagatagtgtttcagtgccct |
368 |
Q |
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| T |
7184593 |
tggtgtatatcctctctctaaaagaccacttgcaacgctggagatagtgtttcagtgccct |
7184653 |
T |
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