View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4901_low_2 (Length: 384)

Name: NF4901_low_2
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4901_low_2
NF4901_low_2
[»] chr8 (9 HSPs)
chr8 (19-363)||(13167061-13167405)
chr8 (23-354)||(6308172-6308503)
chr8 (30-354)||(5605179-5605503)
chr8 (30-354)||(5629867-5630191)
chr8 (30-250)||(5647414-5647634)
chr8 (192-341)||(32635358-32635507)
chr8 (29-312)||(14406597-14406880)
chr8 (30-138)||(5553328-5553436)
chr8 (33-72)||(32635193-32635232)
[»] scaffold0363 (1 HSPs)
scaffold0363 (29-312)||(11973-12256)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 13167061 - 13167405
Alignment:
Q  19 acaaggttagtctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgacc 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  13167061 acaaggttagtctttcctatcagtgattgtcttgtggatcttcctgaaaacttttccgacgaaatttggcttatgagtcaacggagttgtgaacacgacc 13167160  T
Q  119 ctttcataaccttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaa 218  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||  |||| | ||||||||||||||||||||||||||| |||    
T  13167161 ctttcataactttacataaagtacttcctagtcctgccttccagagtgtaaaaaggttaattttttcccatgctcctttgttgtctgaaatcccaagcaa 13167260  T
Q  219 tatctcgttactatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaacttctt 318  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||     
T  13167261 tatctcgttactatcgtcattagactctttaacactgtctggtttaatcatcagaagcttgcctgaaaccatcaggtatcttccccaactgaaacgtctg 13167360  T
Q  319 actgttttcaattgtaaaatgcttcaatctattccgcagctttca 363  Q
      |||||| || ||||||||||||||||||||||| | |||||||    
T  13167361 gatgttttgaactgtaaaatgcttcaatctattccaccgctttca 13167405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 6308503 - 6308172
Alignment:
Q  23 ggttagtctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgacccttt 122  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||||| ||||  | |||| ||||  ||||| |  |||| ||||| ||||||||||    
T  6308503 ggtttgtctttccaatcagtgattgtcttgtggatcttccagaaaactttgccgatcatatttcgctttcgagtccacagaatcgtgaagatgacccttt 6308404  T
Q  123 cataaccttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatc 222  Q
     || |||||| ||||| ||||| ||||||||||||||| ||||||||||   |||||||||    ||  |||| | ||||||||| ||||| | | ||||    
T  6308403 tatcaccttagataaattattttctagtcctgccttccagagtgtaaaagaattaacctttatttatattcctatattgtctgaattcccagatagtatc 6308304  T
Q  223 tcgttactatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaacttcttactg 322  Q
    || ||||||||||| ||| ||| ||||||||||  |||| |   |||||||||||||||||||||||| ||||||||||||| |||  ||| | ||  ||    
T  6308303 tccttactatcgtcgttaaagtctttaacactggatggtatggacattagaagcttgcctgaaaccattaagtatcttccccgacttgaacgtgttgatg 6308204  T
Q  323 ttttcaattgtaaaatgcttcaatctattccg 354  Q
    ||| | ||||||||||| ||||||||||||||    
T  6308203 tttacgattgtaaaatgattcaatctattccg 6308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 354
Target Start/End: Complemental strand, 5605503 - 5605179
Alignment:
Q  30 ctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataacc 129  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| | | || |||||||||   |||| |  |||  ||||||||||| |||||||||||    
T  5605503 ctttcctattagtgattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataacc 5605404  T
Q  130 ttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatctcgttac 229  Q
    ||| |||||||| || ||||||||||||||   ||||||||||  ||||||||||  |||  |  | | |||  |||||||||||||| |||||| ||||    
T  5605403 ttagataaagtactttctagtcctgccttcgtcagtgtaaaaatcttaaccttttgtaatattaatatcttgagtgaaatcccaaacagtatctccttac 5605304  T
Q  230 tatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaacttcttactgttttcaa 329  Q
    |||| |||||||||  ||||| ||||  |    |   ||||| |||||||||||||||||||||||||||||||| ||||| ||   ||| ||||| | |    
T  5605303 tatcatcattagagactttaagactgattaagatgcccattataagcttgcctgaaaccatcaagtatcttccccgactcatacgggttaatgtttacta 5605204  T
Q  330 ttgtaaaatgcttcaatctattccg 354  Q
    |||| || |||||||||||||||||    
T  5605203 ttgtgaattgcttcaatctattccg 5605179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 5629867 - 5630191
Alignment:
Q  30 ctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataacc 129  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| | | || |||||||||   |||| |  |||  ||||||||||| |||||||||||    
T  5629867 ctttcctattagtgattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataacc 5629966  T
Q  130 ttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatctcgttac 229  Q
    ||| |||||||| || ||||||||||||||   ||||||||||  ||||||||||  |||  |  | | |||  |||||||||||||| |||||| ||||    
T  5629967 ttagataaagtactttctagtcctgccttcgtcagtgtaaaaatcttaaccttttgtaatattaatatcttgagtgaaatcccaaacagtatctccttac 5630066  T
Q  230 tatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaacttcttactgttttcaa 329  Q
    |||| |||||||||  ||||| ||||  |    |   ||||| |||||||||||||||||||||||||||||||| ||||| ||   ||| ||||| | |    
T  5630067 tatcatcattagagactttaagactgattaagatgcccattataagcttgcctgaaaccatcaagtatcttccccgactcatacgggttaatgtttacta 5630166  T
Q  330 ttgtaaaatgcttcaatctattccg 354  Q
    |||| || |||||||||||||||||    
T  5630167 ttgtgaattgcttcaatctattccg 5630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 5647414 - 5647634
Alignment:
Q  30 ctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataacc 129  Q
    ||||||||| ||||||||||| || || ||||||||||||||||  ||  | |||||||||   |||||| |||||  |||||| ||||||||||| |||    
T  5647414 ctttcctattagtgattgtctcgtggaccttcctgaaaacttttgtgataatatttggcttggtagtcaacggaatcctgaacaggaccctttcatcacc 5647513  T
Q  130 ttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatctcgttac 229  Q
    ||| ||||| || || ||||||||||||||  ||||||||||   ||||||||||  ||   |||| | ||||||||| ||||| ||| |||||| ||||    
T  5647514 ttagataaattactttctagtcctgccttcatgagtgtaaaagtcttaaccttttgtaagattcctatcttgtctgaattcccagacagtatctccttac 5647613  T
Q  230 tatcgtcattagagtatttaa 250  Q
    ||||||||||| |||||||||    
T  5647614 tatcgtcattaaagtatttaa 5647634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 32635358 - 32635507
Alignment:
Q  192 tcctttgttgtctgaaatcccaaacaatatctcgttactatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatc 291  Q
    |||||| ||||||||||||||| |||| || || ||||||||||||||| ||| ||||| ||| | |  | ||  ||||||||||||||||||||||||     
T  32635358 tcctttcttgtctgaaatcccagacaacatttccttactatcgtcattaaagtctttaagactatttaatatagccattagaagcttgcctgaaaccatt 32635457  T
Q  292 aagtatcttccccaactcaaacttcttactgttttcaattgtaaaatgct 341  Q
    | |||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  32635458 atgtatcttccccaactcgaaagtcttagtgttttcaattgtaaaatgct 32635507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 14406597 - 14406880
Alignment:
Q  29 tctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataac 128  Q
    ||||||| |||||||||||||||||  ||||| |||||||||||   ||    ||||| ||| |||  ||| |||||||| |||| ||||||||||| ||    
T  14406597 tctttccaatcagtgattgtcttgtgaatcttactgaaaactttgtagatcgtatttgtcttgtgaaacaacggaattgtcaacaagaccctttcatcac 14406696  T
Q  129 cttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatctcgtta 228  Q
    |||  ||||| | ||| ||||||||| ||||| |||||||||||  ||   ||||    ||  |||| ||||||||||||||||| |||  ||||| |||    
T  14406697 cttggataaaatgtttactagtcctggcttccagagtgtaaaaaacttggtctttgttgatattcctatgttgtctgaaatcccagacagcatctcctta 14406796  T
Q  229 ctatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaa 312  Q
    || ||||||||||||  ||||| ||| | || | |   ||||| |||||| ||||||||| | |||||||||||||||||||||    
T  14406797 ctgtcgtcattagagagtttaatactatttgatatggccattaaaagcttacctgaaaccgttaagtatcttccccaactcaaa 14406880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 5553328 - 5553436
Alignment:
Q  30 ctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataacc 129  Q
    |||| |||| |||||||||||||| ||||||||||||||||||| |||     |||  ||| ||||| ||| |||| ||||| ||||||||||||| |||    
T  5553328 cttttctattagtgattgtcttgtggatcttcctgaaaacttttgcgattctttttatcttgtgagtgaaaagaatcgtgaaaatgaccctttcatcacc 5553427  T
Q  130 ttacataaa 138  Q
    ||| |||||    
T  5553428 ttagataaa 5553436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 32635193 - 32635232
Alignment:
Q  33 tcctatcagtgattgtcttgtcgatcttcctgaaaacttt 72  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  32635193 tcctatcagtgatagtcttgtggatcttcctgaaaacttt 32635232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 12256 - 11973
Alignment:
Q  29 tctttcctatcagtgattgtcttgtcgatcttcctgaaaacttttccgacgaaatttggcttatgagtcaaaggaattgtgaacatgaccctttcataac 128  Q
    ||||||| |||||||||||||||||  ||||| |||||||||||   ||    ||||| ||| |||  ||| |||||||| |||| ||||||||||| ||    
T  12256 tctttccaatcagtgattgtcttgtgaatcttactgaaaactttgtagatcgtatttgtcttgtgaaacaacggaattgtcaacaagaccctttcatcac 12157  T
Q  129 cttacataaagtatttcctagtcctgccttccggagtgtaaaaaggttaaccttttacaatgctcctttgttgtctgaaatcccaaacaatatctcgtta 228  Q
    |||  ||||| | ||| ||||||||| ||||| |||||||||||  ||   ||||    ||  |||| ||||||||||||||||| |||  ||||| |||    
T  12156 cttggataaaatgtttactagtcctggcttccagagtgtaaaaaacttggtctttgttgatattcctatgttgtctgaaatcccagacagcatctcctta 12057  T
Q  229 ctatcgtcattagagtatttaacactgtctggtttaatcattagaagcttgcctgaaaccatcaagtatcttccccaactcaaa 312  Q
    || ||||||||||||  ||||| ||| | || | |   ||||| |||||| ||||||||| | |||||||||||||||||||||    
T  12056 ctgtcgtcattagagagtttaatactatttgatatggccattaaaagcttacctgaaaccgttaagtatcttccccaactcaaa 11973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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