View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902-Insertion-2 (Length: 585)
Name: NF4902-Insertion-2
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Complemental strand, 1156313 - 1155741
Alignment:
| Q |
11 |
gattatgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttca |
110 |
Q |
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| T |
1156313 |
gattatgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttca |
1156214 |
T |
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| Q |
111 |
aaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaaatataagagagttagaactatatagatttatcaccttctctg |
210 |
Q |
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| T |
1156213 |
aaactcctcttgatgatttggaggaaaaagttgtcactattggcaccgaagaggtaaa-tataagagagttaaaactatatagatttatcaccttcactg |
1156115 |
T |
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| Q |
211 |
ttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttatgcagagttacagcatattgaag |
310 |
Q |
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| T |
1156114 |
ttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttgtgcagagttacagcatattgaag |
1156015 |
T |
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| Q |
311 |
gcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaggcatgaggaatgggaaccattaactttatgttgtt |
410 |
Q |
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| T |
1156014 |
gcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaagcatgaggaatgggaaccattaactttatgttgtt |
1155915 |
T |
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| Q |
411 |
tgtttaagagatgttaatagccttagaggaagcttgtaatgaaaaacatttctagactactattttgttattgttatatcatttttggcactaccgtttt |
510 |
Q |
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| T |
1155914 |
tgtataagatatgtt-agagccttagaggaagcttgtaatgaaaaacatttctagattactattttgttattgttatatcatttttggcactaccgtttt |
1155816 |
T |
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| Q |
511 |
aagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgta |
585 |
Q |
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| T |
1155815 |
aagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgta |
1155741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 23250582 - 23250431
Alignment:
| Q |
16 |
tgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaact |
115 |
Q |
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| T |
23250582 |
tgtcaagagaccagaaatgtatgtggttacggatgatctgatcgtagaacccttgttgtctccagtttcatctatacatgtacttcaacgtttcaaaaca |
23250483 |
T |
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| Q |
116 |
cctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
167 |
Q |
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| T |
23250482 |
cctattgatgatttggaggaaaaagttgtcaccatcggcatcaaagaggtaa |
23250431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 23284329 - 23284254
Alignment:
| Q |
288 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
363 |
Q |
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| T |
23284329 |
tgcagagtcacaacatattcaaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 23284551 - 23284414
Alignment:
| Q |
30 |
aaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactcctcttgatgactt |
129 |
Q |
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| T |
23284551 |
aaatgtatgtggttacggatgatctgattgtagaaccgttgatgtctccagtttcatctatatatgtacttcaacgtttcaaaatacctattgataattt |
23284452 |
T |
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| Q |
130 |
ggaggaaaaagttgtcactattggcaccgaagaggtaa |
167 |
Q |
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| T |
23284451 |
ggaggaaaaagttgtcaccattggcatcaaagaggtaa |
23284414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 23250179 - 23250084
Alignment:
| Q |
268 |
atttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
363 |
Q |
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| T |
23250179 |
atttcacattgttgtgttggttcagagtcgcaacatatttaaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 23283191 - 23283041
Alignment:
| Q |
17 |
gtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactc |
116 |
Q |
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| T |
23283191 |
gtcaagagaccagaaatgtatgtagttacggatgatctgatcctagtaccattgttgtctcgaacttcatctatatacgtacttcaacgtttcaaaacac |
23283092 |
T |
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| Q |
117 |
ctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
167 |
Q |
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| T |
23283091 |
ctattaatgatttggagaaaaaagttctcaccattggcatcgaagaggtaa |
23283041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 23321571 - 23321509
Alignment:
| Q |
302 |
atattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
364 |
Q |
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| T |
23321571 |
atattgaaagctgctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 22632764 - 22632706
Alignment:
| Q |
110 |
aaaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaa |
168 |
Q |
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| T |
22632764 |
aaaactcctcttaatgatttgaaggaaaaagttgtcaccattggcaccaaggaggtaaa |
22632706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 22626402 - 22626470
Alignment:
| Q |
100 |
taaccgtttcaaaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaa |
168 |
Q |
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| T |
22626402 |
taaccgtttgaatactcctcttaatgaattgaaggaaaaagttatcacaattggcatcaaggaggtaaa |
22626470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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