View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902-Insertion-3 (Length: 530)
Name: NF4902-Insertion-3
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Original strand, 51728560 - 51729082
Alignment:
| Q |
8 |
atttcatcactatggttaatgctatatgttgaaatgcagtgtctcttatagaaccttgtagcccttttcattacttctgtctccttaagagtttgtgata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728560 |
atttcatcactatggttaatgctatatgttgaaatgcagtgtctcttatagaaccttgtagcccttttcattacttctgtctccttaagagtttgtgata |
51728659 |
T |
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| Q |
108 |
gcattctttcaacttttggaagcttgaatttgtcatccacaagtcctgaaagccacattgtgcgttactctgaagagtaaagatttgaataggtctcaac |
207 |
Q |
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| T |
51728660 |
gcattctttcaacttttggaagcttgaacttgtcatccacaagtcctgaaagccacattgtgcgtaactctgaagagtaaagatttgaataggtctcaac |
51728759 |
T |
|
| Q |
208 |
atatcccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaat |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728760 |
gtatcccacgaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaat |
51728859 |
T |
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| Q |
308 |
ttcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728860 |
ttcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaa |
51728959 |
T |
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| Q |
408 |
tggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaatttgattccttcattacaaaa |
507 |
Q |
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| T |
51728960 |
tggttttgatctttttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaattcgattccttcattacaaaa |
51729059 |
T |
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| Q |
508 |
ccaccactttgatgcttttttaa |
530 |
Q |
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| T |
51729060 |
ccaccactttgatgcttttttaa |
51729082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 51723325 - 51723591
Alignment:
| Q |
8 |
atttcatcactatggttaatgctatatgttgaaatgcagtgtctcttatagaaccttgtagcccttttcattacttctgtctccttaagagtttgtgata |
107 |
Q |
| |
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||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||| || |||||||||| | ||||| | |
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| T |
51723325 |
atttcatcactatggttgatgcaatatgttgagatgcagtgtctcttatagaa----------cttttcattatctcgatctccttaaggatatgtgaaa |
51723414 |
T |
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| Q |
108 |
gcattctttcaacttttggaagcttgaatttgtcatccacaagtcctgaaagccacattgtgcgttactctgaagagtaaagatttgaataggtctcaac |
207 |
Q |
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| T |
51723415 |
gcatttgctcaacttttgcaagcttgaaattgtcatctacaagtccgtaaagcaatatcgagcatagctctaaagagtgtagctttgaaacactctcaac |
51723514 |
T |
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| Q |
208 |
atatcccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagt |
285 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||| |||| | |||| |||||| || | ||||||||||||| |
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| T |
51723515 |
atat-ccacaaaagccttgtttgaaatcaatggatggatagttctccgatcacgattagaatgactcaagctattagt |
51723591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 528
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
371 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
470 |
Q |
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| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
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| Q |
471 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
528 |
Q |
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| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 528
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
371 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
470 |
Q |
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| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
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| Q |
471 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
528 |
Q |
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| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 19059587 - 19059514
Alignment:
| Q |
184 |
gtaaagatttgaataggtctcaacatatcccacaaaagccatgtttggaatcaatggatggatggttcctctat |
257 |
Q |
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||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
19059587 |
gtaaagatttgaaacactctcaacataacccacaaaggccatgtttggaatcaatggatgaacagttcctctat |
19059514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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