View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902-Insertion-4 (Length: 502)
Name: NF4902-Insertion-4
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Complemental strand, 16287120 - 16286626
Alignment:
| Q |
7 |
aagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagnnnnnnnnnnnnnatctagaagtttttgttgcagagtaagaaatccaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16287120 |
aagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagttttttcttttttatctagaagtttttgttgcagagtaagaaatccaa |
16287021 |
T |
|
| Q |
107 |
caccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccacttag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16287020 |
caccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccacttag |
16286921 |
T |
|
| Q |
207 |
gaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcccaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16286920 |
gaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcccaag |
16286821 |
T |
|
| Q |
307 |
agacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgtctcatgttatgtgtct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16286820 |
agacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgtctcatgttatgtgtct |
16286721 |
T |
|
| Q |
407 |
catttgagatgtgcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatctttgcacttcat |
501 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16286720 |
catttgagatgtgcacgcttctaaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatctttgcacttcat |
16286626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 17262643 - 17263153
Alignment:
| Q |
7 |
aagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagnnnnnnnnnnnnnatctagaagtttttgttgcagagtaagaaatccaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
17262643 |
aagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagttttttcttttttatctagaagtttttgtt-cagagtaagaaatccaa |
17262741 |
T |
|
| Q |
107 |
caccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccacttag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17262742 |
caccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaaaccacttag |
17262841 |
T |
|
| Q |
207 |
gaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcccaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17262842 |
gaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaaggtaattaccccctcgaaatatcccaag |
17262941 |
T |
|
| Q |
307 |
agacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaat-----------------tccttgtg |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17262942 |
agacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgactaattactccttgtg |
17263041 |
T |
|
| Q |
390 |
tctcatgttatgtgtctcatttgagatgtgcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17263042 |
tctcatgttatgtgtctcatttgagatgggcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatc |
17263141 |
T |
|
| Q |
490 |
tttgcacttcat |
501 |
Q |
| |
|
|||||||||||| |
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|
| T |
17263142 |
tttgcacttcat |
17263153 |
T |
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