View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4902-Insertion-5 (Length: 320)

Name: NF4902-Insertion-5
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4902-Insertion-5
NF4902-Insertion-5
[»] chr1 (1 HSPs)
chr1 (10-320)||(43960979-43961288)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 43960979 - 43961288
Alignment:
Q  10 tatatatacaagtagcaaaacacctgtgagaacatctatactcttgcaattgttgaatcaagagtagacgattttctttgatgaatttattctcctccgg 109  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43960979 tatatatacaagtagcaaaacacctacgagaacatctatactcttgcaattgttgaatcaagagtagacgattttctttgatgaatttattctcctccgg 43961078  T
Q  110 tctctgacaatgacgacgggtttgtgacctctgtttggtgcttatggagctctcatgcttactactcttctttgcgctctcttaatcgatggtcccccct 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43961079 tctctgacaatgacgacgggtttgagacctctgtttggtgcttatggagctctcatgcttactactcttctttgcgctctcttaatcgatggtcccccct 43961178  T
Q  210 ttcgcaaaca-nnnnnnnactccgtaatctctctttctcttacaacgttaattgaatgtcaactacatgatcaagacacttgnnnnnnnaacagaaaaca 308  Q
    ||||||||||        |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  43961179 ttcgcaaacattttttttactccgtaatctctc--tctcttacaacgttaattgaatgtcaactacatgatcaagacacttgtttttttaacagaaaaca 43961276  T
Q  309 atgtagtactta 320  Q
    ||||||||||||    
T  43961277 atgtagtactta 43961288  T

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