View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902-Insertion-7 (Length: 222)
Name: NF4902-Insertion-7
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 34639327 - 34639541
Alignment:
| Q |
8 |
cttcaacccaaagcaaaaatggcgttcaattcaatccttcgttccaagtcaagcactttcgttagggctttttcttctgcgactcaattgatcagaaaaa |
107 |
Q |
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| T |
34639327 |
cttcaacccaaagcaaaaatggcgttcaattcaatccttcgttccaagtcaagcactttcgttagggctttttcttctgcgactcaattgatcagaaaaa |
34639426 |
T |
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| Q |
108 |
ctcaaccgggtcatcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttcttctgtatctgtcaaaaacaa |
207 |
Q |
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| T |
34639427 |
ctcaaccgggtcatcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttcttctgtatctgtcaaaaacaa |
34639526 |
T |
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| Q |
208 |
agccacctccgatga |
222 |
Q |
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| T |
34639527 |
agccacctccgatga |
34639541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 34633626 - 34633819
Alignment:
| Q |
21 |
caaaaatggcgttcaattcaatccttcgttccaagtcaagcactttcgttagggctttttcttctgcgactcaattgatcagaaaaactcaaccgggtca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34633626 |
caaaaatggcgttcaattcaatccttcgttccaagtcaagcactttcgttagggctttttcttc--------aattgatcagaaaaactcaaccgggtca |
34633717 |
T |
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| Q |
121 |
tcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttcttctgtatctgtcaaaaacaaagccacctccgat |
220 |
Q |
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| T |
34633718 |
tcgcgccgtgctttccaccaccatcaaccgctacgagggttcatttgttcctaagtttaacttttcttctgtagctataaaaaacgaacccaactccgat |
34633817 |
T |
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