View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902_high_11 (Length: 255)
Name: NF4902_high_11
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_high_11 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 24539323 - 24539433
Alignment:
| Q |
17 |
aatatcagtaagcatgtaaagatcatcactttctcaaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaatcaaacatagttac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24539323 |
aatatcagtaagcatgtaaagatcatcactttctcaaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaatcaaacatagttac |
24539422 |
T |
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| Q |
117 |
ttcaccggcca |
127 |
Q |
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||||||||||| |
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| T |
24539423 |
ttcaccggcca |
24539433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 26035219 - 26035162
Alignment:
| Q |
45 |
ctttctcaaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaa |
102 |
Q |
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| T |
26035219 |
ctttctcaaccttaataatttagcaaatttcaactcttgcaaagatcaaaatcataaa |
26035162 |
T |
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 14734304 - 14734190
Alignment:
| Q |
117 |
ttcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggt |
216 |
Q |
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| T |
14734304 |
ttcaccggccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctccatcacacgcttcgttcctcctaggt |
14734205 |
T |
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| Q |
217 |
cctattcagctctca |
231 |
Q |
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| T |
14734204 |
cctattcagctctca |
14734190 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 21889668 - 21889561
Alignment:
| Q |
117 |
ttcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggt |
216 |
Q |
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|||| |||||||||| |||||| |||| ||||||| ||||||||||||||||| ||| | | ||||||| |||| ||| ||||||||||||| | ||| |
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| T |
21889668 |
ttcatcggccaccttctggcacgattaaattcttaccattacttgctccgagctcctaccttctagttcatctccaacacttaattcgttcctcttgggt |
21889569 |
T |
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| Q |
217 |
cctattca |
224 |
Q |
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| T |
21889568 |
cctattca |
21889561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 21339725 - 21339614
Alignment:
| Q |
118 |
tcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtc |
217 |
Q |
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| T |
21339725 |
tcaccggccaccttttggagtgagtggatccttactgtcacttgctccgagttcatacttctgagt--atctccatcacataatttgttcctcctaggtt |
21339628 |
T |
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| Q |
218 |
ctattcagctctca |
231 |
Q |
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| T |
21339627 |
ctattcagctctca |
21339614 |
T |
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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 21376 - 21452
Alignment:
| Q |
155 |
ttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtcctattcagctctca |
231 |
Q |
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| T |
21376 |
ttacttgctctgagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctca |
21452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 14818335 - 14818259
Alignment:
| Q |
155 |
ttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtcctattcagctctca |
231 |
Q |
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| T |
14818335 |
ttacttgctctgagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctca |
14818259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 14284150 - 14284100
Alignment:
| Q |
181 |
agttcatttccatcacataattcgttcctcctaggtcctattcagctctca |
231 |
Q |
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| T |
14284150 |
agttcatctccatcacatacttcgttcctcctaggtccgattcagctctca |
14284100 |
T |
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