View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4902_high_16 (Length: 227)
Name: NF4902_high_16
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 50762490 - 50762622
Alignment:
| Q |
75 |
accaactcatatgaaacaaataacgaccttcgtagaatcaccttctaaatgaacaaaatgttgaaaatgatcaactatatgcatcatatcatctgaacaa |
174 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50762490 |
accaactcatatgaaataaataacgaccttcgtagaatcaccttctaaatgaacaaaatgttgaaaatgatcaactatatgcatcatatcatctgaacaa |
50762589 |
T |
|
| Q |
175 |
attcacaaccattggcgaataagaggccaaatg |
207 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |
|
|
| T |
50762590 |
attcacaaccattggaggataagaggccaaatg |
50762622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 43198562 - 43198642
Alignment:
| Q |
119 |
ctaaatgaacaaaatgttgaaaatgatcaactatatgcatcatatcatctgaacaaattcacaaccattggcgaataagag |
199 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| ||||| || |||| ||||| | |||||||||||||||||| |
|
|
| T |
43198562 |
ctaaatgaacaaaatgtggaaattgatcaactatatgaatcatgtcggctgagcaaatgtccgaccattggcgaataagag |
43198642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University