View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902_high_2 (Length: 528)
Name: NF4902_high_2
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 278 - 516
Target Start/End: Complemental strand, 34884043 - 34883805
Alignment:
| Q |
278 |
gtaggttttgatgtcggcgatatcattgcgaagaaccaaagacactgcattnnnnnnncttccacctaagattgttgagacttgttatgttgaactttca |
377 |
Q |
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| T |
34884043 |
gtaggttttgatgtcggcgatatcattgcgaagaaccaaagacactgcattgggggggcttccacctaagattgttgagacttgttatgttgaactttca |
34883944 |
T |
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| Q |
378 |
tttgaagaacgtaaactgtatgatgaggttaaagaggaaataaagtcgcttatgatgcatcataacagcaatgacagactagtatctagttattccacta |
477 |
Q |
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| T |
34883943 |
tttgaagaacgtaaactgtatgatgaggttaaagaggaaataaagtcgcttatgatgcatcataacagcaatgacagactagtatctagttattccactg |
34883844 |
T |
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| Q |
478 |
tactaagtatgattctaagacttcgtcagatctgtgctg |
516 |
Q |
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| T |
34883843 |
tactaagtatgattctaagacttcgtcagatctgtgctg |
34883805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 34884319 - 34884115
Alignment:
| Q |
1 |
aaagcttggttcagcgacctcttaatcaaggaaaacagactgggatgagtcgattgcaggtacaattcgataacaatgtattgatacttaaaaggtcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
34884319 |
aaagcttggttcagcgacctcttaatcaaggaaaacagactgggatgagtcgattgcaggtacaattcgataacaatgtaatgattcttaaagggtcatt |
34884220 |
T |
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| Q |
101 |
ctttacttgcatgtgtaggggattacataaataaactattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgacc |
200 |
Q |
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| T |
34884219 |
ctttacttgcatgtgtaggggactacataaataaactattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgacc |
34884120 |
T |
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| Q |
201 |
aatta |
205 |
Q |
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| T |
34884119 |
aatta |
34884115 |
T |
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