View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902_low_17 (Length: 213)
Name: NF4902_low_17
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 37189665 - 37189471
Alignment:
| Q |
11 |
tggtgggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaagga |
107 |
Q |
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| T |
37189665 |
tggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaagga |
37189566 |
T |
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| Q |
108 |
tttgaatattgccattgatagtttgatgatgaataattgtaggacctaaggagggtatattttgtatagagagaatttgatttgggatttgatga |
202 |
Q |
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| T |
37189565 |
tttgaatattgccattgatagtttgatgatgaataattgtaggacctaaggagggtatattttgtatagagagaatttgatttgggatttgatga |
37189471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 37180189 - 37180383
Alignment:
| Q |
11 |
tggtgggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaagga |
107 |
Q |
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| T |
37180189 |
tggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaagga |
37180288 |
T |
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| Q |
108 |
tttgaatattgccattgatagtttgatgatgaataattgtaggacctaaggagggtatattttgtatagagagaatttgatttgggatttgatga |
202 |
Q |
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| T |
37180289 |
tttgaatattgccattgatagtttgatgaggaataattgtaggagctaaggagagtatattttgtatagagagaatttgatttgggatttgatga |
37180383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 37181543 - 37181363
Alignment:
| Q |
16 |
ggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttga |
112 |
Q |
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| T |
37181543 |
ggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttgg |
37181444 |
T |
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| Q |
113 |
atattgccattgatagtttgatgatgaataattgtaggacctaaggagggtatattttgtatagagagaatttgatttgggatttgatga |
202 |
Q |
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| T |
37181443 |
ttgaggccattgataacttgatg------aattgtaggagctaaggactgta---tttgtatagagagaatttgcttttggatttgatga |
37181363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 37187880 - 37187988
Alignment:
| Q |
19 |
aaatttggttgtgttgtttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattg |
118 |
Q |
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| T |
37187880 |
aaatttggttgtgttgtctgtaaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatg |
37187979 |
T |
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| Q |
119 |
ccattgata |
127 |
Q |
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| T |
37187980 |
ccattgata |
37187988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 38704284 - 38704369
Alignment:
| Q |
30 |
tgttgtttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg |
111 |
Q |
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| T |
38704284 |
tgttgtttgcaaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg |
38704369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 27096567 - 27096527
Alignment:
| Q |
31 |
gttgtttgcaaaagatgacgagcttctaggctcatgtttga |
71 |
Q |
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| T |
27096567 |
gttgtttgcaaaaggtttcgagcttctaggctcatgtttga |
27096527 |
T |
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