View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4902_low_3 (Length: 409)

Name: NF4902_low_3
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4902_low_3
NF4902_low_3
[»] chr1 (4 HSPs)
chr1 (7-392)||(6886417-6886802)
chr1 (174-250)||(23802596-23802672)
chr1 (180-244)||(4524587-4524651)
chr1 (171-235)||(5346048-5346112)
[»] chr2 (7 HSPs)
chr2 (174-250)||(16389467-16389543)
chr2 (173-232)||(14433830-14433889)
chr2 (188-241)||(1001390-1001443)
chr2 (188-240)||(8686901-8686953)
chr2 (192-239)||(11814065-11814112)
chr2 (192-232)||(32484074-32484114)
chr2 (177-250)||(8083807-8083880)
[»] chr5 (2 HSPs)
chr5 (174-250)||(21144683-21144759)
chr5 (174-227)||(7471455-7471508)
[»] chr4 (3 HSPs)
chr4 (174-241)||(12141777-12141844)
chr4 (174-233)||(43698765-43698822)
chr4 (175-235)||(45036774-45036834)
[»] chr8 (3 HSPs)
chr8 (174-244)||(34678418-34678488)
chr8 (188-244)||(23431731-23431787)
chr8 (174-244)||(38753436-38753506)
[»] chr3 (2 HSPs)
chr3 (192-233)||(47190200-47190241)
chr3 (174-232)||(26609798-26609856)
[»] chr7 (2 HSPs)
chr7 (188-244)||(31311985-31312041)
chr7 (209-248)||(14718300-14718339)
[»] chr6 (2 HSPs)
chr6 (176-240)||(22719342-22719406)
chr6 (178-235)||(22712213-22712270)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 6886417 - 6886802
Alignment:
Q  7 aatatgcaatttttaaaatccaaatggtgatagtttattatcctaattaaagctatactgttccaatatgaattttataaaacttaacctatacattaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886417 aatatgcaatttttaaaatccaaatggtgatagtttattatcctaattaaagctatactgttccaatatgaattttataaaacttaacctatacattaga 6886516  T
Q  107 gtctattaaatcaatgtcctcttaaagctataaccaagcacatgacgaaatactttgacagttaacttgtctcccgagatatcacttggttgaaagtttc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||    
T  6886517 gtctattaaatcaatgtcctcttaaagctataaccaagcacatgacgaaatactttaacaattaacctgtctcccgaggtatcacttggttgaaagtttc 6886616  T
Q  207 tctcttcaacctcgagaaacttggttcgaaacccgacaaccagatacttgaacagttaagcttaattaaacaatgtaaagaaaatggctcgtattcataa 306  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886617 tctcttcaacctcgagaaactcggtttgaaacccgacagccagatactttaacagttaagcttaattaaacaatgtaaagaaaatggctcgtattcataa 6886716  T
Q  307 atcaaaatgcaagaaatataaacatgaacttaccaaaaacattgatcccaagatgattatacacaggggagaaaaaaccatcaaca 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886717 atcaaaatgcaagaaatatagacatgaacttaccaaaaacattgatcccaagatgattatacacaggggagaaaaaaccatcaaca 6886802  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 23802672 - 23802596
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 250  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  23802672 tgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacccaga 23802596  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 4524587 - 4524651
Alignment:
Q  180 ccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 244  Q
    |||||| |||| |||||||| ||||||||||||||||||  ||||||| ||||||||||||||||    
T  4524587 ccgagaaatcatttggttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgaca 4524651  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 5346112 - 5346048
Alignment:
Q  171 acttgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 235  Q
    |||||||||||||||  |||||||||||| |||||||||||||||| | ||| |||| |||||||    
T  5346112 acttgtctcccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttcga 5346048  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 16389467 - 16389543
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 250  Q
    ||||||||||||  |||||||||||| ||||||||||||||||| ||||||||| |||| || ||||| ||||||||    
T  16389467 tgtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtttgagacccggcaaccaga 16389543  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 14433830 - 14433889
Alignment:
Q  173 ttgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggtt 232  Q
    |||||||| ||||  |||||||||||| ||||||||||||||||||||||||||| ||||    
T  14433830 ttgtctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 1001390 - 1001443
Alignment:
Q  188 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccg 241  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||| |||||    
T  1001390 tcacttggttgagaatttctctcttcaacctcgagaaactcggttcgagacccg 1001443  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8686953 - 8686901
Alignment:
Q  188 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaaccc 240  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  8686953 tcacttggttgagagtttctctcttcatcctcgagaaactcggttcgagaccc 8686901  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 11814112 - 11814065
Alignment:
Q  192 ttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacc 239  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  11814112 ttggttgagagtttctctcttcaacctcgagaaactcagttcgaaacc 11814065  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 32484114 - 32484074
Alignment:
Q  192 ttggttgaaagtttctctcttcaacctcgagaaacttggtt 232  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  32484114 ttggttgagagtttctctcttcaacctcgagaaactcggtt 32484074  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 8083880 - 8083807
Alignment:
Q  177 ctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 250  Q
    |||||||||  |||| | ||||| |||||||||||| ||||| |||||||| |||| || ||||||||| ||||    
T  8083880 ctcccgagaagtcacgtagttgagagtttctctctttaaccttgagaaactcggtttgagacccgacaatcaga 8083807  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 21144683 - 21144759
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 250  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||   ||||||| ||||||| |||||||| |||||    
T  21144683 tgtctcccgagaaatcactttgttgagagtttctctcttcaaccgacagaaactcggttcgatacccgacacccaga 21144759  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 7471455 - 7471508
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaact 227  Q
    |||||||| |||  |||||||||||| ||||||| |||||||||||||||||||    
T  7471455 tgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaact 7471508  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 12141844 - 12141777
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccg 241  Q
    ||||||||||||  | |||||||||| ||| ||||||||||||||||||||||| |||| || |||||    
T  12141844 tgtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtttgagacccg 12141777  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 43698765 - 43698822
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttc 233  Q
    ||||||||||||  |||||||||||| |  |||||||||||||||| |||||||||||||    
T  43698765 tgtctcccgagaagtcacttggttgaga--ttctctcttcaacctcaagaaacttggttc 43698822  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 45036834 - 45036774
Alignment:
Q  175 gtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 235  Q
    |||||||||||  |||| ||||||| |||||||||||||||||| | |||||| |||||||    
T  45036834 gtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcga 45036774  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 34678488 - 34678418
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 244  Q
    |||||||||| | ||||||| ||||| |||||||||||||||| | ||| ||||||||| || ||||||||    
T  34678488 tgtctcccgaaaaatcacttagttgagagtttctctcttcaactttgaggaacttggttggagacccgaca 34678418  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 23431731 - 23431787
Alignment:
Q  188 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 244  Q
    |||||| |||||||||||||||||||||| || ||||||| |||| || ||||||||    
T  23431731 tcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccgaca 23431787  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 38753506 - 38753436
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 244  Q
    ||||||| |||| || |||||||||| ||| |||||||||||||| |||| ||| |||| || ||||||||    
T  38753506 tgtctcctgagagattacttggttgagagtatctctcttcaaccttgagatactcggttagagacccgaca 38753436  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 47190200 - 47190241
Alignment:
Q  192 ttggttgaaagtttctctcttcaacctcgagaaacttggttc 233  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  47190200 ttggttgagagtttctctcttcaacctcgagaaactcggttc 47190241  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 26609798 - 26609856
Alignment:
Q  174 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggtt 232  Q
    ||||||||||||  ||||| |||||| ||||||||||||||| || |||||||| ||||    
T  26609798 tgtctcccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtt 26609856  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 31311985 - 31312041
Alignment:
Q  188 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 244  Q
    |||| ||||||| ||||||||||||||||||||||| ||| |||| || ||||||||    
T  31311985 tcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccgaca 31312041  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 14718300 - 14718339
Alignment:
Q  209 tcttcaacctcgagaaacttggttcgaaacccgacaacca 248  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  14718300 tcttcaacctcgagaaacttgattcgagacccgacaacca 14718339  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 22719342 - 22719406
Alignment:
Q  176 tctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaaccc 240  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||  ||||| ||||||||| ||||    
T  22719342 tctcccgagaagtcacttggttgagagtttctcttttcaacctgaagaaagttggttcgagaccc 22719406  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 22712270 - 22712213
Alignment:
Q  178 tcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 235  Q
    ||||||||  ||| |||||| | ||| ||||||||||| |||||||||||||||||||    
T  22712270 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttcga 22712213  T

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