View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4902_low_4 (Length: 374)
Name: NF4902_low_4
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 43960631 - 43960978
Alignment:
| Q |
1 |
gttaagggttaacacnnnnnnncaatcaattattacggcctctgcctaacggtcataaactcatatgcatcgtatcatttagatttcgcagattaataaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43960631 |
gttaagggttaacacaaaaaaacaatcaattattacggcctctgcctaacggtcataaactcatatgcatcctatcatttagatttcgcagattaataaa |
43960730 |
T |
|
| Q |
101 |
ttttataaatgtctttttacacaannnnnnnataatcatataaatgataatgaataataaaatagtgggattactcttaatcttgtatttatcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43960731 |
ttttataaatgtctttttacacaatttttttataatcatataaatgataatgaataataaaatagtgggattactcttaatcttgtatttatcatttgat |
43960830 |
T |
|
| Q |
201 |
tatttcttatgaacgttttttgggtactattctcaccaatatttttaatcaaactactatggtacaattgtcgggtgaaagatgcatgtttagattttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43960831 |
tatttcttatgaacgttttttgggtactattctcaccaacatttttaatcaaactactatggtacaattgtcgggtgaaagatgcatgtttagattttac |
43960930 |
T |
|
| Q |
301 |
aagtgaaaagaatgtgtatgaagatatttataggtgagagttttggat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43960931 |
aagtgaaaagaatgtgtatgaagatatttataggtgagagttttggat |
43960978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University