View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4902_low_5 (Length: 366)

Name: NF4902_low_5
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4902_low_5
NF4902_low_5
[»] chr3 (4 HSPs)
chr3 (9-347)||(47451476-47451814)
chr3 (57-342)||(11015115-11015394)
chr3 (57-326)||(11005552-11005815)
chr3 (63-332)||(11024133-11024396)
[»] chr4 (37 HSPs)
chr4 (9-266)||(45365796-45366053)
chr4 (69-344)||(48852834-48853106)
chr4 (43-231)||(49043778-49043960)
chr4 (55-193)||(7790381-7790519)
chr4 (55-326)||(45371696-45371961)
chr4 (53-345)||(48147333-48147625)
chr4 (61-265)||(45384520-45384730)
chr4 (57-211)||(48870843-48870997)
chr4 (57-211)||(48876147-48876301)
chr4 (57-211)||(48886529-48886683)
chr4 (55-195)||(7773447-7773587)
chr4 (57-192)||(48156053-48156188)
chr4 (16-199)||(48899035-48899218)
chr4 (55-193)||(7771696-7771834)
chr4 (53-134)||(49038498-49038579)
chr4 (238-341)||(49043994-49044097)
chr4 (9-190)||(7237319-7237500)
chr4 (9-133)||(7908663-7908787)
chr4 (72-195)||(7765941-7766064)
chr4 (55-145)||(7878732-7878822)
chr4 (90-333)||(48903119-48903359)
chr4 (75-227)||(37826632-37826784)
chr4 (72-195)||(7786763-7786886)
chr4 (63-134)||(48864395-48864466)
chr4 (63-133)||(7813838-7813908)
chr4 (54-142)||(49048176-49048264)
chr4 (219-322)||(49048361-49048464)
chr4 (63-133)||(7800998-7801068)
chr4 (220-326)||(48705169-48705275)
chr4 (287-331)||(49041002-49041046)
chr4 (288-331)||(48863413-48863456)
chr4 (163-332)||(50669244-50669416)
chr4 (162-224)||(43596154-43596216)
chr4 (110-192)||(50250403-50250485)
chr4 (162-195)||(7878045-7878078)
chr4 (291-332)||(50250629-50250670)
chr4 (63-131)||(7823332-7823400)
[»] chr6 (1 HSPs)
chr6 (54-326)||(21015995-21016261)
[»] chr5 (7 HSPs)
chr5 (57-211)||(9120046-9120200)
chr5 (89-222)||(179330-179463)
chr5 (41-145)||(29688478-29688582)
chr5 (250-326)||(29696401-29696477)
chr5 (250-331)||(42562144-42562225)
chr5 (250-326)||(29688297-29688373)
chr5 (66-134)||(42561966-42562034)
[»] chr8 (6 HSPs)
chr8 (62-199)||(15349178-15349315)
chr8 (105-195)||(4962191-4962281)
chr8 (240-344)||(4031710-4031814)
chr8 (162-195)||(12200641-12200674)
chr8 (162-195)||(12445069-12445102)
chr8 (90-138)||(4031583-4031631)
[»] chr7 (1 HSPs)
chr7 (72-142)||(48884176-48884246)
[»] chr1 (3 HSPs)
chr1 (250-331)||(24310370-24310451)
chr1 (103-140)||(24310570-24310607)
chr1 (104-140)||(24416132-24416168)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 47451476 - 47451814
Alignment:
Q  9 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47451476 aatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttg 47451575  T
Q  109 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451576 tattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 47451675  T
Q  209 catggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451676 catggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaa 47451775  T
Q  309 ccaataaatagccccattgaagagccaccctactctagg 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47451776 ccaataaatagccccattgaagagccaccctactctagg 47451814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 342
Target Start/End: Original strand, 11015115 - 11015394
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||| |||||||||| || |||||||| ||  ||||||||||||  ||||||||||||||||| ||||||||||||||| |  |||  |      ||| |    
T  11015115 aatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct------ccata 11015208  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 256  Q
     ||| |||||| |||||||||||||||| ||||||| ||||||   ||||||||| ||||||| ||||||| |||| ||  || |||| ||| |||||||    
T  11015209 gcccatagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttcca 11015308  T
Q  257 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccaccctact 342  Q
     |||||||||  || ||||||||| ||| |||| |||||| |||||||  ||||||| ||||| |||||| ||||||  |||||||    
T  11015309 ctaaatcaaagccaacaataacatccattgataaatcatggcgaaaagagaaccaatgaatagtcccattaaagagcatccctact 11015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 11005552 - 11005815
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    ||||||||||||||| |  ||||||| |||   |||||||||||  ||||||||||||||||| ||||||||||||| | | ||||         ||| |    
T  11005552 aatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccata 11005645  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 256  Q
     ||| ||||||||||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||| ||| |||  ||  ||||||| ||| |||||||    
T  11005646 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttcca 11005745  T
Q  257 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 326  Q
     |||||||||  || ||||||||| ||| || | |||||| |||||||  ||||||| ||||| ||||||    
T  11005746 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccatt 11005815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 332
Target Start/End: Original strand, 11024133 - 11024396
Alignment:
Q  63 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaaccctt 162  Q
    ||||||||| || |||||||||||   |||||||||||  ||||||||||||||||| ||||||||||||| | |  ||      |   ||| | ||| |    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgttaca------ccccccatagcccat 11024226  T
Q  163 agactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaat 262  Q
    ||||| |||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||||||| |||  ||  || |||| ||  ||||||| |||||    
T  11024227 agactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaat 11024326  T
Q  263 caaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagag 332  Q
    |||| |||  |||||||| ||| |||| |||||  |||||||  ||||||| ||||  |||||| |||||    
T  11024327 caaaggcaataataacatccattgataaatcattgcgaaaagagaaccaatgaatattcccattaaagag 11024396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 45365796 - 45366053
Alignment:
Q  9 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 108  Q
    ||||||||| ||||||||||||  ||| ||| ||||||| |||| ||||||||||||||||| ||||||  ||||||||  ||||||||||   |||||     
T  45365796 aatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcacttta 45365895  T
Q  109 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 208  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||| | |||  | ||| | ||||||||||||||||||||||||||||| |  |||||    
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtgaggtt 45365995  T
Q  209 catggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaa 266  Q
    || ||| ||| |||||||| ||||  | ||  |||| ||| ||||| |||||||||||    
T  45365996 cacggttaaactcatctggaaaatgaatataaaaaagtttcctttcgattaaatcaaa 45366053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 344
Target Start/End: Complemental strand, 48853106 - 48852834
Alignment:
Q  69 agaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagacta 168  Q
    ||||||||||||||||||   ||||||||||   ||||||||||||||||| ||||||||||||||| ||||||         |||  |||| || |||     
T  48853106 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatccc------ccatgacccatatactt 48853013  T
Q  169 agaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatg 268  Q
    |||||||||| ||||||||||||| | |||| |||||||||||||| ||||||||| ||||||  ||  ||||||| ||| ||||||||||||||||| |    
T  48853012 agaaattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaagg 48852913  T
Q  269 cagcaataac---attcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactct 344  Q
    |  |||||||   |||||| | || ||||||||||||||||||||||| |||||||||||| || ||| ||||||||||    
T  48852912 ccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactct 48852834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 49043778 - 49043960
Alignment:
Q  43 aagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 142  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||   ||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49043778 aagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcat 49043877  T
Q  143 tatgac-aatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaa 231  Q
    | || | | ||||       || |||||||| ||| ||||||||||||||| ||||||  ||||||||||| ||||||||| ||||||||    
T  49043878 tctgtctagtcca-------tacactaagaagttcaccaaatacccacaaatcacaatctgtaggttcatgttcaaaatcacctggcaaa 49043960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 7790519 - 7790381
Alignment:
Q  55 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 154  Q
    |||||| |||||||||||||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||||||| | ||||||||| | |||||     
T  7790519 ggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatcct 7790420  T
Q  155 caacccttagactaagaaattctccaaatacccacaaac 193  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7790419 tagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 326
Target Start/End: Original strand, 45371696 - 45371961
Alignment:
Q  55 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 154  Q
    |||| |||||| |||| |||||||| ||||||   |||||||||||  ||||||||||||||||| ||||||||||||||| |||| |  |       |     
T  45371696 ggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatcttcctt------ct 45371789  T
Q  155 caacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttc 254  Q
     | |||  ||||| ||||||| ||| |||||||| ||| ||||||  |||||  || |||||||| |||| ||||||  ||  ||||||| ||| | |||    
T  45371790 tagcccaaagactgagaaattttccgaatacccaaaaatcacaatatgtaggaccagggtcaaaaccatcaggcaaagacatctctaaaagtttccgttc 45371889  T
Q  255 cattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 326  Q
    |||||||||||| |||  ||||||| |||| |||| |||||||||||||| |||||||||||||||||||||    
T  45371890 cattaaatcaaaggcaagaataacactcatcgataaatcatgacgaaaagacaaccaataaatagccccatt 45371961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 345
Target Start/End: Original strand, 48147333 - 48147625
Alignment:
Q  53 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatc 152  Q
    ||||||||||||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||||||||||||||||||| |   ||| | |  |||    
T  48147333 agggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatc 48147432  T
Q  153 cacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctt 252  Q
    || | || ||||||| ||||||| ||||||||||||||||  || ||    || |||| || ||||| ||||||| |||  ||  ||||||| | | |||    
T  48147433 catacccgttagactgagaaattgtccaaatacccacaaatgactatattcagattcaaggccaaaaccatctggaaaaggcatctctaaaagtctcctt 48147532  T
Q  253 tccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactcta 345  Q
    ||||||||||||||||||  |||||||| | | | || |||||   ||||||||||||||| |||||||||| | || ||  |||||||||||    
T  48147533 tccattaaatcaaatgcaataataacatcccttgctaaatcattgtgaaaagccaaccaatgaatagccccactaaaaagtgaccctactcta 48147625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 265
Target Start/End: Original strand, 45384520 - 45384730
Alignment:
Q  61 ccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaact---atatca---ttatgacaatcca 154  Q
    ||||||| || ||||||| ||||||||  |||||||||||  ||||| |||||||||||||||||||||||||||   |||| |   |||| | ||| ||    
T  45384520 ccatcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgca 45384619  T
Q  155 caacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttc 254  Q
     | | |  | ||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| || ||  |||| |||  ||||    
T  45384620 tagctcaaaaactgagaaattctccaaatacccacaaaccacaatcggtaggttcacggttaaactcatctggcaaatgcatataaaaaagtttcatttc 45384719  T
Q  255 cattaaatcaa 265  Q
     ||||||||||    
T  45384720 gattaaatcaa 45384730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 48870997 - 48870843
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48870898  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 211  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48870897 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48870843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 48876301 - 48876147
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48876202  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 211  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48876201 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 48886683 - 48886529
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48886584  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 211  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48886583 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48886529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 7773447 - 7773587
Alignment:
Q  55 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 154  Q
    |||||| | |||| ||||||||||||||  ||   |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  |  ||||     
T  7773447 ggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcct 7773546  T
Q  155 caacccttagactaagaaattctccaaatacccacaaacca 195  Q
     | ||| || ||||||| |||||||||||||||||||||||    
T  7773547 tagcccatacactaagatattctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 48156053 - 48156188
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||||||||||||| ||| |||||||| ||   |||||| ||||  ||||||||||| ||||||||||||||||||||| | ||||||   ||||| |||    
T  48156053 aatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaaca 48156152  T
Q  157 acccttagactaagaaattctccaaatacccacaaa 192  Q
     ||| || ||| ||||||||||||||||||||||||    
T  48156153 gcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 48899218 - 48899035
Alignment:
Q  16 ccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctt 115  Q
    |||||||||||| ||   || |||||||||||   || ||||||||||||||||| |||||||||||||  |  |||||| || || ||||| |||||||    
T  48899218 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctt 48899119  T
Q  116 tcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaat 199  Q
    |||||||||||||||||||| ||||||||  | |||   || ||| || ||| | ||| |||||||| ||||||||||||||||    
T  48899118 tcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 48899035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 7771834 - 7771696
Alignment:
Q  55 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 154  Q
    |||||| |||||| ||||||||||||||| ||   ||| |||||||  ||||||||||||||||||||||||||| ||| | ||||||||| | |||||     
T  7771834 ggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatcct 7771735  T
Q  155 caacccttagactaagaaattctccaaatacccacaaac 193  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7771734 tagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 49038498 - 49038579
Alignment:
Q  53 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 134  Q
    |||||||||||  |||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  49038498 agggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 49043994 - 49044097
Alignment:
Q  238 tctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccacc 337  Q
    ||||||| ||| ||||| ||||||||||| ||| ||||||||||||| |||| |||| || ||||||||||||| | |||||||||||| |||||| |||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgacc 49044093  T
Q  338 ctac 341  Q
    ||||    
T  49044094 ctac 49044097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 7237319 - 7237500
Alignment:
Q  9 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 108  Q
    |||||||||| |||||||||||  ||  |||| |||||| |||   ||||||| || || || ||| |||||||| ||   |||| ||||||  | ||||    
T  7237319 aatatcaccattttttgtagagtgtatagggtgaaagtagtgaccaggaatgcgatgaagaggaagcacaagagttttagtccaaaacgaatgcattttg 7237418  T
Q  109 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccaca 190  Q
    ||||||||||||||||||||| ||| | ||||||||| | |||||  | ||| |||||| ||||||||||||||||||||||    
T  7237419 tattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 7908787 - 7908663
Alignment:
Q  9 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 108  Q
    |||||||||  |||||||||||  ||  |||| |||||| |||   |||||| |||||| ||||||||||||||| || | |||||| ||||  ||||||    
T  7908787 aatatcaccgttttttgtagagtgtatagggtgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttg 7908688  T
Q  109 tattctttcatcacccatatttcaa 133  Q
    |||||||||||||||||||||||||    
T  7908687 tattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 7766064 - 7765941
Alignment:
Q  72 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 171  Q
    ||||||||| |||||   ||| |||||||  ||||||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  172 aattctccaaatacccacaaacca 195  Q
    ||||||||| ||||||||||||||    
T  7765964 aattctccagatacccacaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 7878822 - 7878732
Alignment:
Q  55 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattat 145  Q
    |||||| ||||||  |||||||||||||| ||   |||||| ||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  7878822 ggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattat 7878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 48903359 - 48903119
Alignment:
Q  90 ccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccac 189  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| | ||| ||  |   |||||| | ||| ||| |||||||||||||||||||||||     
T  48903359 ccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgt---aatccaaagcccataggctaagaaattctccaaatacccat 48903263  T
Q  190 aaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggata 289  Q
    ||| |||| || |||| ||||| ||| | ||||  ||| | |   |  || ||||  | | ||| |||||||||||| ||| ||||||||||| |   ||    
T  48903262 aaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtcttttttcattaaatcaaaggcaacaataacattctttctta 48903163  T
Q  290 tatcatgacgaaaagccaaccaataaatagccccattgaagagc 333  Q
     ||||||| ||||||||||| ||| |||||||||||| ||||||    
T  48903162 aatcatgatgaaaagccaactaatgaatagccccattaaagagc 48903119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 37826632 - 37826784
Alignment:
Q  75 aacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaat 174  Q
    ||||||||||||   |||||||||||  | |||||||||||||||||||| || || || | ||| ||||| ||   |||   ||| |||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  175 tctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctgg 227  Q
    ||||||||||||||||||||| |||  | ||| |||| || ||||||||||||    
T  37826732 tctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctgg 37826784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 7786886 - 7786763
Alignment:
Q  72 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 171  Q
    ||||||||||||||| | ||||||  |||  || |||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  172 aattctccaaatacccacaaacca 195  Q
    ||||| ||| ||||||||||||||    
T  7786786 aattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  63 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 134  Q
    |||||||| |||||||||| ||||   |||||||||||  ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  63 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 133  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||||||||||| ||||||||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 49048176 - 49048264
Alignment:
Q  54 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 142  Q
    ||||||| ||||| |||||| ||||| ||||||   ||| |||||||  ||||| || |||||||||||||||||||||||||||||||    
T  49048176 gggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcat 49048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 49048361 - 49048464
Alignment:
Q  219 atcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaata 318  Q
    ||||||||||| |  || ||||| ||  ||||||||| |||||||||| ||| ||||||||||||| |||| |||| || ||||||||||||| | ||||    
T  49048361 atcatctggcagagacatatctacaaggtttctttccgttaaatcaaaggcaacaataacattcatcgataaatcaagatgaaaagccaaccagtgaata 49048460  T
Q  319 gccc 322  Q
    ||||    
T  49048461 gccc 49048464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  63 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 133  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||| ||||||| ||||||||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 48705169 - 48705275
Alignment:
Q  220 tcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatag 319  Q
    ||||||||||||  || ||| |||| ||  ||||||||||||||||| ||| ||||||||| | |   || |||||||||| |||||||||||| |||||    
T  48705169 tcatctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatag 48705268  T
Q  320 ccccatt 326  Q
    |||||||    
T  48705269 ccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 49041002 - 49041046
Alignment:
Q  287 atatatcatgacgaaaagccaaccaataaatagccccattgaaga 331  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  49041002 atatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 49041046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 48863456 - 48863413
Alignment:
Q  288 tatatcatgacgaaaagccaaccaataaatagccccattgaaga 331  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  48863456 tatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 48863413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 332
Target Start/End: Complemental strand, 50669416 - 50669244
Alignment:
Q  163 agactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaatt---cacatctaaaaattttctttccatta 259  Q
    ||||| |||||||||||||||||||||||||||||||  | || || ||||  ||||||||| || | | |   ||  ||||| | ||| |||||||| |    
T  50669416 agactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatca 50669317  T
Q  260 aatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagag 332  Q
    ||||||| ||| |||| |||  ||    || ||||| ||||||||||||||||||||||||| |||| |||||    
T  50669316 aatcaaaggcaacaatgacaaacacctttaaatcataacgaaaagccaaccaataaatagcctcattaaagag 50669244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 43596154 - 43596216
Alignment:
Q  162 tagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatc 224  Q
    ||||||||||||||| ||||||||||||| | |||||||  |||| |||| ||||||| ||||    
T  43596154 tagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatc 43596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 50250403 - 50250485
Alignment:
Q  110 attctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaa 192  Q
    |||||||||||||||||||||||  | || |||| ||| ||||  || ||  |||||| |||| |||||||||||||||||||    
T  50250403 attctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagactgagaatttctccaaatacccacaaa 50250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 7878078 - 7878045
Alignment:
Q  162 tagactaagaaattctccaaatacccacaaacca 195  Q
    |||||| |||||||||||||||||||||||||||    
T  7878078 tagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 50250629 - 50250670
Alignment:
Q  291 atcatgacgaaaagccaaccaataaatagccccattgaagag 332  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  50250629 atcataacgaaaagccaaccaatgaatagccccattaaagag 50250670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  63 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttc 131  Q
    ||||| ||||||||||||||| || | ||||||| |||  |||||||| ||||| | ||||||||||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 326
Target Start/End: Complemental strand, 21016261 - 21015995
Alignment:
Q  54 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcc 153  Q
    ||||||| |||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||| ||||||||||||||||||||| |||      ||    
T  21016261 gggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatcactat------cc 21016168  T
Q  154 acaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttcttt 253  Q
    | |  || || ||| | |||||| || |||||||||||| ||||||   |||||||||| || | |||||| ||||||  ||  || |||| ||||||||    
T  21016167 atagtccatacactcaaaaattcaccgaatacccacaaatcacaatatataggttcatgttccatatcatccggcaaagacatgtcgaaaagttttcttt 21016068  T
Q  254 ccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 326  Q
    | || |||||||| |||   ||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  21016067 ctatcaaatcaaaggcaatgataactttcattgataaatcatgacgaaaagccaaccaatgaatagccccatt 21015995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 9120200 - 9120046
Alignment:
Q  57 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 156  Q
    |||||| |||||||| | ||||||||| || | |||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||  | |||||| |    
T  9120200 aatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccata 9120101  T
Q  157 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 211  Q
     ||| || ||| |||||||||||||||||||||| | ||||||| |||| |||||    
T  9120100 gcccatatactgagaaattctccaaatacccacacatcacaatttgtagcttcat 9120046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 179463 - 179330
Alignment:
Q  89 cccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaataccca 188  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||| || ||| ||||||| ||||||||||||    
T  179463 cccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T
Q  189 caaaccacaattggtaggttcatggtcaaaatca 222  Q
     | | ||||||| |||| ||||| ||||| ||||    
T  179363 tacatcacaatttgtagcttcatagtcaatatca 179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 29688582 - 29688478
Alignment:
Q  41 aaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatc 140  Q
    ||||||| |||  ||||||| || ||| ||||||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || |    
T  29688582 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtacc 29688483  T
Q  141 attat 145  Q
    |||||    
T  29688482 attat 29688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 29696477 - 29696401
Alignment:
Q  250 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 326  Q
    ||||| ||||||| ||| ||| ||||||||  ||| |||||||||| ||||||||||||||| | ||||||||||||    
T  29696477 ctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 42562144 - 42562225
Alignment:
Q  250 ctttccattaaatcaaatgcagcaataacat--tcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 331  Q
    |||||| |||||| ||| ||| |||||||||  ||||  ||||||||||||||| ||||||||| | |||||||||||||||||    
T  42562144 ctttccgttaaatgaaaggcaacaataacatggtcat--atatatcatgacgaagagccaaccagtgaatagccccattgaaga 42562225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 29688373 - 29688297
Alignment:
Q  250 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 326  Q
    |||||| |||||| |||| || ||||||||||||| ||| |||||| | ||||||||||||| | |||| |||||||    
T  29688373 ctttccgttaaatgaaatccaacaataacattcattgatctatcataatgaaaagccaaccagtgaataaccccatt 29688297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 42561966 - 42562034
Alignment:
Q  66 aatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 134  Q
    ||||| |||||||||| ||||   |||||| ||||  |||||||||||||||||||||||||| |||||    
T  42561966 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 15349315 - 15349178
Alignment:
Q  62 catcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaaccct 161  Q
    ||||||||  |||||||||| |||||  |||||| || || |||||||||||||||||||||||||||||||   |||||||| || |||||  |  ||     
T  15349315 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagacca 15349216  T
Q  162 tagactaagaaattctccaaatacccacaaaccacaat 199  Q
     ||||||| |||||| ||||| ||||||||||||||||    
T  15349215 aagactaaaaaattcgccaaagacccacaaaccacaat 15349178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  105 tttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaacca 195  Q
    ||||||||||||||||||||||||||||||| ||  |||  || ||||||   ||| |||||| |||||||||||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 4031710 - 4031814
Alignment:
Q  240 taaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccaccct 339  Q
    ||||| |||||||||| |||||||||| ||| | |||||||| || |||| ||||||||||||||||||||||| |||||  ||| | || ||| |||||    
T  4031710 taaaagttttctttccgttaaatcaaaggcaacgataacatttatcgataaatcatgacgaaaagccaaccaatgaatagatccactaaaaagcgaccct 4031809  T
Q  340 actct 344  Q
    |||||    
T  4031810 actct 4031814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 12200674 - 12200641
Alignment:
Q  162 tagactaagaaattctccaaatacccacaaacca 195  Q
    ||||||||||||||||||||||||||||||||||    
T  12200674 tagactaagaaattctccaaatacccacaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 12445102 - 12445069
Alignment:
Q  162 tagactaagaaattctccaaatacccacaaacca 195  Q
    ||||||||||||||||||||||||||||||||||    
T  12445102 tagactaagaaattctccaaatacccacaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 4031583 - 4031631
Alignment:
Q  90 ccaagacgaattaactttgtattctttcatcacccatatttcaactata 138  Q
    |||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  4031583 ccaagacgaatgcattttgtattctttcataacccatatttcaactata 4031631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  72 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 142  Q
    |||||||||||||||   |||||||  ||  ||||||||||||||||||||| ||||||||||| ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 24310451 - 24310370
Alignment:
Q  250 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 331  Q
    ||||| ||||||| ||| | | ||||||||| |  | ||| ||||||||||| ||||||||| | |||||||||||||||||    
T  24310451 ctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 24310370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 24310607 - 24310570
Alignment:
Q  103 actttgtattctttcatcacccatatttcaactatatc 140  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24310607 actttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 24416168 - 24416132
Alignment:
Q  104 ctttgtattctttcatcacccatatttcaactatatc 140  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  24416168 ctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University