View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902_low_6 (Length: 358)
Name: NF4902_low_6
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 16287442 - 16287115
Alignment:
| Q |
10 |
aagaaaatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16287442 |
aagaaaatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
16287343 |
T |
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| Q |
110 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16287342 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
16287243 |
T |
|
| Q |
210 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16287242 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
16287143 |
T |
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| Q |
310 |
aagaattctagcaaggacggggaagcct |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
16287142 |
aagaattctagcaaggacggggaagcct |
16287115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 17262321 - 17262648
Alignment:
| Q |
10 |
aagaaaatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17262321 |
aagaaaatccgtaatatacgaaaaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
17262420 |
T |
|
| Q |
110 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17262421 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
17262520 |
T |
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| Q |
210 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17262521 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
17262620 |
T |
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| Q |
310 |
aagaattctagcaaggacggggaagcct |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
17262621 |
aagaattctagcaaggacggggaagcct |
17262648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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