View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4902_low_9 (Length: 278)
Name: NF4902_low_9
Description: NF4902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4902_low_9 |
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| [»] scaffold0758 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 34639085 - 34639331
Alignment:
| Q |
13 |
aatattagcatatccaattaaacttaaactgacaatgttaaacacattttgttccagcaaacaccactatcctctaatcctcgtaatcccaccttccacc |
112 |
Q |
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|||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34639085 |
aatattagcatatccaattaaatttaaagtgataatgttaatcacattttgttccaacaaacaccactatcctctaatcctcgtaatcccaccttccacc |
34639184 |
T |
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| Q |
113 |
tcaatcaaatggcccacatttcatctgcgtcgtattcagatctaacggctgataagacgcattgtgcaagagtagaaagagaagaaacttccattcacaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34639185 |
tcaatcaaatggcccacatttcatctgcgtcgtattcagatctaacggctgataagacgcaaagtgcaagagtagaaagagaagaaacttccattcacaa |
34639284 |
T |
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| Q |
213 |
tcatttctaaaaccctagcaaaacccctttctctcttctcttcttca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34639285 |
tcatttctaaaaccctagcaaaacccctttctctcttctcttcttca |
34639331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 34633459 - 34633618
Alignment:
| Q |
106 |
ttccacctcaatcaaatggcccacatttcatctgcgtcgtattcagatctaacggctgataagacgcattgtgcaagag-------tagaaagagaagaa |
198 |
Q |
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|||||||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||| |||||| ||||||| |
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| T |
34633459 |
ttccacctcaatcaaacggcccacatttcatctgcttcatattcagatctaacggatgataagacgcaaagtgcaagagtagaaaatagaaatagaagaa |
34633558 |
T |
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| Q |
199 |
acttccattcacaatcatttctaaaaccctagcaaaacccctttctctcttctcttcttca |
259 |
Q |
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| T |
34633559 |
actttcattcacaatcttttctaaaaccctagcaaaa-ccctttctctcttctcttcttca |
34633618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 19320090 - 19320056
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttc |
66 |
Q |
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| T |
19320090 |
aaactaaaactgacaatgttaaacacattttgttc |
19320056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 4705 - 4746
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttccagcaaa |
73 |
Q |
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| T |
4705 |
aaacttaaggtgacaatgttaaacacattttgttccaacaaa |
4746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 32076 - 32117
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttccagcaaa |
73 |
Q |
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| T |
32076 |
aaacttaaagtgataatgttaaacacattttgttccaacaaa |
32117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 11514252 - 11514288
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttcca |
68 |
Q |
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| T |
11514252 |
aaacttaaggtgacaatgttaaacacattttgttcca |
11514288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 13654368 - 13654408
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttccagcaa |
72 |
Q |
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| T |
13654368 |
aaacttaaggtgataatgttaaacacattttgttccagcaa |
13654408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15552481 - 15552517
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttcca |
68 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
15552481 |
aaacttaaagagacaatgttaaacacattttgttcca |
15552517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 21682849 - 21682813
Alignment:
| Q |
32 |
aaacttaaactgacaatgttaaacacattttgttcca |
68 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
21682849 |
aaacttaaggtgacaatgttaaacacattttgttcca |
21682813 |
T |
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