View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4903-Insertion-2 (Length: 964)
Name: NF4903-Insertion-2
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4903-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 206 - 566
Target Start/End: Original strand, 48668685 - 48669045
Alignment:
| Q |
206 |
gaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatggatcg |
305 |
Q |
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| T |
48668685 |
gaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatggatcg |
48668784 |
T |
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| Q |
306 |
atataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaagat |
405 |
Q |
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| T |
48668785 |
atataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaagat |
48668884 |
T |
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| Q |
406 |
agcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactacacaaacaccaat |
505 |
Q |
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| T |
48668885 |
agcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactacacaaacaccaat |
48668984 |
T |
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| Q |
506 |
taggcattagcattaactcttttccacccaccttatgtaaaatcaatttcatggatttcat |
566 |
Q |
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| T |
48668985 |
taggtattagcattaactcttttccacccacctcatgtaaaatcaatttcatggatttcat |
48669045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 648 - 960
Target Start/End: Original strand, 48669127 - 48669428
Alignment:
| Q |
648 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattgaaatcatcgggtccgaacgccggttca |
747 |
Q |
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| T |
48669127 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattg-aatcatcgggtccgaacgccggttca |
48669225 |
T |
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| Q |
748 |
ttgacgttctctgttcgtgttcggagacggttaccgggattttctttcaatctgtgaactttaagtatgtgaaaattggggttaccatttatctgataaa |
847 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||| |||||||||||| |
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| T |
48669226 |
ttgacgttctctgtccgtgttcggagacggttacc-ggattttc-ttcaatctgtgaaccttaagtatgtgaaa--ttgggttacca-ttatctgataaa |
48669320 |
T |
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| Q |
848 |
ccatggtgtttatttgctcactatacccaattctacttgttgtgtttaggtggctgacggttggtagtcttagcaaagaagatctttggaagaagatttg |
947 |
Q |
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| T |
48669321 |
ccatggtgtttatttgttcactata-ccaattctacttgttgtgtttag--tgctga-ggttggtagtcttagcaaagaagatctttggaagaagatttg |
48669416 |
T |
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| Q |
948 |
ggaaagatgcaac |
960 |
Q |
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| T |
48669417 |
gg-aagatgcaac |
48669428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 48668488 - 48668652
Alignment:
| Q |
9 |
gtgatggcaacacgattttgataccacgtcttcatacaaaatctcaagacaagggatcgcgtcccttgtatattcttcaattaactcattcctaattgat |
108 |
Q |
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| T |
48668488 |
gtgatggcaacacgattttgataccacgtcttcatacaaaatctcaagacaagggatcacgtcccttgtatattcttcaattaactcattcctaattgat |
48668587 |
T |
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| Q |
109 |
gcgagactaaccattaacactttaactgcaacattttgggagcggaaaatggagaagttgggata |
173 |
Q |
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| T |
48668588 |
gcgagactaaccattaacactttaactgcaacattttgggagcggaaaatggagaagttgggata |
48668652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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