View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4903-Insertion-4 (Length: 321)

Name: NF4903-Insertion-4
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4903-Insertion-4
NF4903-Insertion-4
[»] chr1 (11 HSPs)
chr1 (6-321)||(6346739-6347054)
chr1 (132-210)||(6371899-6371977)
chr1 (229-313)||(6403506-6403591)
chr1 (114-168)||(6357830-6357884)
chr1 (116-210)||(6426924-6427018)
chr1 (113-207)||(6366073-6366170)
chr1 (132-211)||(6414287-6414369)
chr1 (114-168)||(6379499-6379553)
chr1 (132-209)||(6403359-6403436)
chr1 (229-278)||(6419893-6419942)
chr1 (132-168)||(6397212-6397248)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 6346739 - 6347054
Alignment:
Q  6 cagtttctctctcgatactaccaaaagctttgaacaatttcattctctcattctttttatttcattcatacattcatggaaggaacacaaaactgtgttg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6346739 cagtttctctctcgatactaccaaaagctttgaacaatttcattctctcattctgtttatttcattcatacattcatggaaggaacacaaaactgtgttg 6346838  T
Q  106 gaacccccaaatcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgt 205  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6346839 gaagcaccaaatcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgt 6346938  T
Q  206 aagtacatgcacatttaattttgacttgcccatctcttaaattttttatctttttacaattcatttaactgcacttaattctcttgtactaattttcagc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6346939 aagtacatgcacatttaattttgacttgcccatctcttaaattttttatctttttacaattcatttaactgcacttaattctcttgtactaattttcagc 6347038  T
Q  306 ttttgattatttttta 321  Q
    ||||||||||||||||    
T  6347039 ttttgattatttttta 6347054  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 6371899 - 6371977
Alignment:
Q  132 atttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgtaagta 210  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||| || |||||||| ||||    
T  6371899 atttactggaaccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaacaacttgttagta 6371977  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 6403506 - 6403591
Alignment:
Q  229 acttgcccatctcttaaattttttatctttttacaattcatttaactgcacttaattctcttgtactaa-ttttcagcttttgatt 313  Q
    ||||||||| || ||||||||| | ||||||||||||||||||||||||| ||| |||| ||| | ||| ||||||||||||||||    
T  6403506 acttgcccaacttttaaattttgtttctttttacaattcatttaactgcagttagttctattgaagtaagttttcagcttttgatt 6403591  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 6357830 - 6357884
Alignment:
Q  114 aaatcattggaggaactcatttattggacccattttcagttcatccatttcaccc 168  Q
    ||||||| |||||||  |||||| |||||||||||||||||||||||||||||||    
T  6357830 aaatcatgggaggaagacatttactggacccattttcagttcatccatttcaccc 6357884  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 6426924 - 6427018
Alignment:
Q  116 atcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgtaagta 210  Q
    ||||| |||||||  |||||| ||||||||||||||||||||||||||||| |  |||||  ||| ||| |||||||| || |||||||| ||||    
T  6426924 atcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttcttcgcaacactgattttcaacaacaacttgttagta 6427018  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 6366073 - 6366170
Alignment:
Q  113 caaatcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttct---gagcatcaccgattttcaccatcaacttgtaa 207  Q
    |||||||| |||||||   ||||||||| |||||||||| ||||||||||| ||| |||||||    |||| |||||||||||| || ||||||||||    
T  6366073 caaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaa 6366170  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 6414287 - 6414369
Alignment:
Q  132 atttattggacccattttcagttcatccatttcaccctttttct---gagcatcaccgattttcaccatcaacttgtaagtac 211  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||    |||| |||| ||||||| || |||| |||||||||    
T  6414287 atttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctgtaagtac 6414369  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 6379499 - 6379553
Alignment:
Q  114 aaatcattggaggaactcatttattggacccattttcagttcatccatttcaccc 168  Q
    ||||||| |||||||  |||||| ||||||||||| || ||||||||||||||||    
T  6379499 aaatcatgggaggaagacatttactggacccatttccaattcatccatttcaccc 6379553  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 6403359 - 6403436
Alignment:
Q  132 atttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgtaagt 209  Q
    ||||| |||| ||||||||| |||||||||||||| || ||||| |||| |   |||||||| || ||||||||||||    
T  6403359 atttactggaaccattttcaattcatccatttcactctatttcttagcacctttgattttcaacaacaacttgtaagt 6403436  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 6419893 - 6419942
Alignment:
Q  229 acttgcccatctcttaaattttttatctttttacaattcatttaactgca 278  Q
    |||||||||||| || |||||| ||| |||||||||||| ||||||||||    
T  6419893 acttgcccatcttttcaattttgtatatttttacaattcctttaactgca 6419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 6397212 - 6397248
Alignment:
Q  132 atttattggacccattttcagttcatccatttcaccc 168  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6397212 atttactggacccatttccagttcatccatttcaccc 6397248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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