View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4903_low_1 (Length: 856)

Name: NF4903_low_1
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4903_low_1
NF4903_low_1
[»] chr3 (1 HSPs)
chr3 (14-837)||(53148172-53149018)
[»] chr2 (1 HSPs)
chr2 (14-230)||(11734180-11734396)
[»] chr4 (7 HSPs)
chr4 (14-242)||(5936429-5936657)
chr4 (14-232)||(5530564-5530782)
chr4 (14-178)||(5923020-5923184)
chr4 (28-230)||(38178833-38179035)
chr4 (277-353)||(5530449-5530525)
chr4 (310-355)||(5923310-5923355)
chr4 (292-374)||(38179091-38179173)
[»] chr8 (1 HSPs)
chr8 (14-227)||(40919598-40919811)
[»] chr1 (1 HSPs)
chr1 (9-229)||(45454458-45454678)
[»] chr7 (1 HSPs)
chr7 (37-126)||(34839810-34839899)


Alignment Details
Target: chr3 (Bit Score: 759; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 14 - 837
Target Start/End: Original strand, 53148172 - 53149018
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148172 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 53148271  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148272 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 53148371  T
Q  214 ttgtaatacacattgatcctttccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccatgttcgtcgcatatcacctccc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53148372 ttgtaatacacattgatcctttccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccgtgttcgtcgcatatcacctccc 53148471  T
Q  314 agaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttgg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148472 agaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttgg 53148571  T
Q  414 g----------gaaatgaaatggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaa 503  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148572 ggaaatgaaatgaaatgaaatggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaa 53148671  T
Q  504 atgcgggggttaatatggtaataatggaggggcgggagggatattttta----------ttttgttttggagccgttcgtttcatttcatttgtttgaag 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  53148672 atgcgggggttaatatggtaataatggaggggcgggagggatatttttattttgttttgttttgttttggagccgttcgtttcatttcatttgtttgaag 53148771  T
Q  594 ggttacaaccatgttacaggcacgaggaacaccaactataaccagcgcataactttgatcacgatatcctcaaggaccccacttttcttaacttcttttt 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148772 ggttacaaccatgttacaggcacgaggaacaccaactataaccagcgcataactttgatcacgatatcctcaaggaccccacttttcttaacttcttttt 53148871  T
Q  694 acgttattgccccattgctgcattattgcattcggatcgcatctatttcggtgcattttcacgattttattatgcatcatcaatcatttcattgtttttt 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148872 acgttattgccccattgctgcattattgcattcggatcgcatctatttcggtgcattttcacgattttattatgcatcatcaatcatttcattgtttttt 53148971  T
Q  794 ac---tactaaggtaaattgatttcttagccttacttgtgacttatc 837  Q
    ||   ||||||||||||||||||||||||||||||||||||||||||    
T  53148972 actagtactaaggtaaattgatttcttagccttacttgtgacttatc 53149018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 11734180 - 11734396
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  11734180 catcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactgaccgaacacaaaattatcaggacg 11734279  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 213  Q
    |||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||||||||||| || |  ||||||||||||||||||   || |||    
T  11734280 aaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcctca 11734379  T
Q  214 ttgtaatacacattgat 230  Q
    |||||||| ||||||||    
T  11734380 ttgtaataaacattgat 11734396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 5936429 - 5936657
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| |||||||||||||||   |||||||| || || ||||| || |     
T  5936429 catcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagttattaccagcaccactctgtccaaagacaaagttatccggtct 5936528  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 213  Q
    |||||||| |||| |||| ||||| | || ||| ||||| || || |||||||||||||||||||| |||||||||||  |||||||||||   ||||||    
T  5936529 aaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatccataagaaccgctctaggaacgaaccttccaccacttgcttca 5936628  T
Q  214 ttgtaatacacattgatcctttccaattg 242  Q
    ||||||||||||||||||| |||||||||    
T  5936629 ttgtaatacacattgatccgttccaattg 5936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 5530782 - 5530564
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||||| |||||||||   || |||||||| |||||||| || |     
T  5530782 catcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagttattcccagcaccactctgaccaaacacaaaattatccggtct 5530683  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 213  Q
    |||||||| |||  |||| ||||| | |||||| ||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||   ||||||    
T  5530682 aaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatccataagaaccgctctcggaacaaatcttccaccacttgcttca 5530583  T
Q  214 ttgtaatacacattgatcc 232  Q
    ||||||||||||| |||||    
T  5530582 ttgtaatacacatcgatcc 5530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 5923020 - 5923184
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| |||||||||||||||   || |||||||| || ||||| || |     
T  5923020 catcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagttattaccagcaccactctgaccaaacacaaagttatccggtct 5923119  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaa 178  Q
    |||||||| |||| |||| ||||| | || ||| |||||||| || |||||||||||||||||||    
T  5923120 aaagatctgaccgtacggtccagaccggacactgtccatagtccccggttcaagatccataagaa 5923184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 38178833 - 38179035
Alignment:
Q  28 tcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccga 127  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||| || || || || ||||| ||||| || ||||||||||  || |    
T  38178833 tcaatcaactcagcgccttcggtgtaatgacctttcgcccaattatttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggccaa 38178932  T
Q  128 acggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacatt 227  Q
    ||||||| || |  |     ||||| || |||||||||||||||||||| || || |  ||||| || |||||||||  ||||||||||||||| |||||    
T  38178933 acggaccggaacgaagcgaatccatggttccaggttcaagatccataagcacggcgcgtggaacgtatcttccaccaccagcttcattgtaatagacatt 38179032  T
Q  228 gat 230  Q
    |||    
T  38179033 gat 38179035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 5530525 - 5530449
Alignment:
Q  277 gttggatcaatgccatgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttg 353  Q
    |||||||| || ||||||||  | || | ||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  5530525 gttggatcgattccatgttcagcacaaaccacttcccagaatttggctccgatttggttaccgcattggccaccttg 5530449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 5923310 - 5923355
Alignment:
Q  310 tcccagaatttggatccaatttggttaccgcattggccaccttgaa 355  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  5923310 tcccagaattttgctccgatttggttaccgcattggccaccttgaa 5923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 38179091 - 38179173
Alignment:
Q  292 tgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcat 374  Q
    ||||||||||| || || ||||||||||||| ||| || |||||||||||||| || ||||| | ||| | ||| ||||||||    
T  38179091 tgttcgtcgcagataacttcccagaatttggctccgatctggttaccgcattgcccgccttggatgtggaggatttctctcat 38179173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 40919598 - 40919811
Alignment:
Q  14 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 113  Q
    ||||||||||||| ||||| |  ||||| ||||| || ||||| ||||| ||||||||||||||||| |||  |||||||||||| || |||||||| |     
T  40919598 catcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaattattaccagctccattttgtccaaacacaaagttatcaggcct 40919697  T
Q  114 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 213  Q
    ||| || || || || |||||||| |  | ||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||||   ||||||    
T  40919698 aaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtccattagaacagctctaggaacatatcttccaccacttgcttca 40919797  T
Q  214 ttgtaatacacatt 227  Q
    ||||| ||||||||    
T  40919798 ttgtagtacacatt 40919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 45454458 - 45454678
Alignment:
Q  9 gacatcatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatca 108  Q
    |||| ||||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||| || |||||||| || || ||||||    
T  45454458 gacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcaccggactgtccaaaaacaaagttatca 45454557  T
Q  109 ggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaag 208  Q
    || || || |||| |||| | |||||||||||||  || |||||||| || || || |||||||| ||||| |||||||||||  | ||||||| |   |    
T  45454558 ggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagctctaggaacgaatcttccacaactcg 45454657  T
Q  209 cttcattgtaatacacattga 229  Q
    |||| ||||| ||||||||||    
T  45454658 cttcgttgtagtacacattga 45454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 34839899 - 34839810
Alignment:
Q  37 tcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccg 126  Q
    ||||| ||||| || ||||||||||| |||||||| ||||| || || || || || || ||||| ||||||||||| ||||||| ||||    
T  34839899 tcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgccggactgaccgaaaacgaagttatcaggacggaagatctgaccg 34839810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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