View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4903_low_11 (Length: 240)
Name: NF4903_low_11
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4903_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 25565862 - 25565641
Alignment:
| Q |
19 |
attaggagtctctacactcttcatccattcatttgatgctgccaatggagctggtttaccaccagaagaaaaaccaaaattatgtgatggaacttgtgag |
118 |
Q |
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| T |
25565862 |
attaggagtctctacactcttcatccattcatttgatgctgccaatggagctggtttaccaccagaagaaaaaccaaaattatgtgatggaacttgtgag |
25565763 |
T |
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| Q |
119 |
aaagagcttgaaaatgtatggtgagattacatagttccctttctatgccttacctgagattaatgtcactatattgctcagaatacattcacattccatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||||||||| || |
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| T |
25565762 |
aaagagcttgaaaatgtatggtgagattacatagttccctttctatgccttacctatgattaatgtctctgtattgctcagaatgcattcacattccgtg |
25565663 |
T |
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| Q |
219 |
cagttgcgtcatctttaatatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
25565662 |
cagttgcgtcatctttaatatt |
25565641 |
T |
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