View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4903_low_2 (Length: 588)

Name: NF4903_low_2
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4903_low_2
NF4903_low_2
[»] chr3 (20 HSPs)
chr3 (17-374)||(26529543-26529900)
chr3 (374-553)||(37742723-37742899)
chr3 (375-550)||(44380252-44380427)
chr3 (377-544)||(33509684-33509851)
chr3 (452-547)||(50934501-50934596)
chr3 (402-548)||(47426350-47426496)
chr3 (485-555)||(32319473-32319543)
chr3 (482-550)||(10179868-10179936)
chr3 (452-548)||(47186175-47186271)
chr3 (379-550)||(35094544-35094717)
chr3 (452-548)||(31187145-31187241)
chr3 (482-550)||(10018671-10018739)
chr3 (452-548)||(42664673-42664769)
chr3 (375-550)||(17466271-17466446)
chr3 (452-548)||(34029366-34029462)
chr3 (396-546)||(39498689-39498838)
chr3 (482-550)||(10123211-10123279)
chr3 (375-429)||(19619217-19619271)
chr3 (495-547)||(21963073-21963125)
chr3 (493-533)||(25859037-25859077)
[»] chr2 (14 HSPs)
chr2 (376-550)||(34392080-34392254)
chr2 (375-550)||(7381690-7381864)
chr2 (374-534)||(23863800-23863958)
chr2 (105-259)||(43779399-43779553)
chr2 (375-550)||(37357915-37358094)
chr2 (452-550)||(21603957-21604055)
chr2 (374-525)||(4779608-4779759)
chr2 (375-553)||(4775629-4775808)
chr2 (374-438)||(21606149-21606213)
chr2 (375-527)||(25275620-25275771)
chr2 (394-543)||(14565870-14566019)
chr2 (375-517)||(41095784-41095926)
chr2 (489-548)||(37811091-37811150)
chr2 (374-410)||(919447-919483)
[»] chr5 (17 HSPs)
chr5 (376-550)||(19357261-19357434)
chr5 (375-550)||(11607532-11607707)
chr5 (375-543)||(33858536-33858704)
chr5 (374-548)||(1826259-1826433)
chr5 (414-550)||(39570080-39570216)
chr5 (452-550)||(9827786-9827884)
chr5 (375-532)||(33271630-33271787)
chr5 (452-548)||(38010689-38010785)
chr5 (452-548)||(13015381-13015477)
chr5 (452-548)||(29989962-29990058)
chr5 (98-240)||(35868428-35868569)
chr5 (481-548)||(13086753-13086820)
chr5 (452-548)||(13478120-13478216)
chr5 (106-195)||(29374536-29374625)
chr5 (399-493)||(42148201-42148295)
chr5 (452-547)||(13421085-13421180)
chr5 (375-411)||(9827903-9827939)
[»] chr4 (18 HSPs)
chr4 (375-548)||(12473704-12473877)
chr4 (375-548)||(12528113-12528286)
chr4 (381-550)||(35869575-35869744)
chr4 (375-550)||(22343335-22343510)
chr4 (400-547)||(33249397-33249544)
chr4 (377-547)||(52910050-52910219)
chr4 (375-550)||(51811912-51812087)
chr4 (392-550)||(21260792-21260950)
chr4 (375-550)||(55590480-55590644)
chr4 (452-548)||(52012778-52012874)
chr4 (462-556)||(34829168-34829262)
chr4 (452-548)||(9799438-9799534)
chr4 (106-206)||(34934150-34934250)
chr4 (489-544)||(49998486-49998541)
chr4 (375-444)||(1796654-1796723)
chr4 (452-547)||(49999663-49999758)
chr4 (374-436)||(35781021-35781083)
chr4 (507-550)||(33174516-33174560)
[»] chr1 (14 HSPs)
chr1 (375-548)||(2569037-2569209)
chr1 (377-548)||(29119324-29119495)
chr1 (379-550)||(32676134-32676305)
chr1 (374-548)||(46435462-46435624)
chr1 (399-550)||(8462127-8462277)
chr1 (452-548)||(8809715-8809811)
chr1 (455-550)||(25161307-25161402)
chr1 (476-550)||(7214510-7214584)
chr1 (375-434)||(15387156-15387215)
chr1 (159-259)||(8382284-8382384)
chr1 (499-547)||(16679821-16679868)
chr1 (489-548)||(35998252-35998311)
chr1 (376-411)||(36771533-36771568)
chr1 (145-206)||(7608541-7608602)
[»] chr6 (8 HSPs)
chr6 (374-547)||(1211841-1212014)
chr6 (375-548)||(5403874-5404047)
chr6 (375-550)||(32644836-32645009)
chr6 (483-553)||(11753162-11753232)
chr6 (452-548)||(34245567-34245663)
chr6 (374-419)||(10503256-10503301)
chr6 (455-547)||(11113557-11113649)
chr6 (393-444)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (375-550)||(35341534-35341709)
chr7 (375-548)||(48250154-48250329)
chr7 (375-550)||(48072387-48072560)
chr7 (375-524)||(32694568-32694717)
chr7 (455-544)||(31306951-31307041)
chr7 (393-444)||(40856949-40857000)
chr7 (489-547)||(36776062-36776120)
chr7 (452-548)||(40893116-40893213)
chr7 (484-548)||(40856392-40856456)
[»] chr8 (11 HSPs)
chr8 (374-548)||(24337827-24338001)
chr8 (110-269)||(25843013-25843172)
chr8 (103-267)||(29282562-29282727)
chr8 (375-550)||(11254026-11254200)
chr8 (381-556)||(41179567-41179742)
chr8 (375-541)||(18168392-18168559)
chr8 (375-541)||(18631949-18632116)
chr8 (398-540)||(4708328-4708470)
chr8 (452-548)||(1514803-1514899)
chr8 (110-234)||(42351691-42351815)
chr8 (496-547)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (375-547)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (375-550)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (375-550)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (499-547)||(23094-23142)
scaffold0263 (452-547)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (452-548)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 26529543 - 26529900
Alignment:
Q  17 agtattatggcataaaaaattgatagtaaaatgcatattccagtactaccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttg 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26529543 agtattatggcataaaaaatggatagtaaaatgcatattccagtactcccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttg 26529642  T
Q  117 gatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgcc 216  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26529643 gatgtgcggtggcacaggttttcttgcatcccaaggcaaaaattgtcgtgatttggacaacctaacatatgtagcttcacaacaaacgtgaccacctgcc 26529742  T
Q  217 gtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttacaagatctcaacgatcatagtcaataaatatgtaaggacccaatttttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26529743 gtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaaaagatctcaacgatcatagtcaataaatatgcaaggacccaatttttt 26529842  T
Q  317 gttatggatatttttccttcaattagcaaaaccctttactttactcatgcaagaatgg 374  Q
    | ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  26529843 ggtatggatatttttccttcaattagcaaaaccatttacttcactcattcaagaatgg 26529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 553
Target Start/End: Complemental strand, 37742899 - 37742723
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||       ||||||||||||||||||||||    
T  37742899 gggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggta 37742800  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 553  Q
    |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||    
T  37742799 atgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaaccc 37742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 44380427 - 44380252
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     ||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaa 44380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 544
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  377 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 476  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| |||||| || |||||||| |||||       || ||||||||||||||   ||| |    
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  477 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 544  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 452 - 547
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||||||||| |||||  ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 402 - 548
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  402 tataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactcta 501  Q
    ||||||||||  |||||| |||||  || ||||||||||||||       |||||||||||||||||   ||| |||| |||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  502 attggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 485 - 555
Target Start/End: Original strand, 32319473 - 32319543
Alignment:
Q  485 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaacccca 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatccca 32319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 10179868 - 10179936
Alignment:
Q  482 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaa 10179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 379 - 550
Target Start/End: Complemental strand, 35094717 - 35094544
Alignment:
Q  379 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 478  Q
    |||| ||||||| ||||||||||| || |||||| |||||| ||||||||||||| |||| |||||       |||||||||||||  |||  ||| |||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  479 atattggtaggtggcacactc--taattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    | |||||||||||||| ||||  ||||| | ||||||||||||||| |||||| ||||||||||  ||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaa 35094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 10018671 - 10018739
Alignment:
Q  482 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaa 10018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  |||  ||| ||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 17466446 - 17466271
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaa 17466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 546
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  396 atggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcac 495  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||       ||||| |||||||  |||  |||  ||| || | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  496 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 546  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 10123211 - 10123279
Alignment:
Q  482 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaa 10123279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 19619271 - 19619217
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtca 429  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  495 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 533
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  493 cacactctaattggccaatggtatataccattggtacctta 533  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 376 - 550
Target Start/End: Original strand, 34392080 - 34392254
Alignment:
Q  376 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 475  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | |||| || ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  476 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaa 34392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 7381864 - 7381690
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||||||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaa 7381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 374 - 534
Target Start/End: Original strand, 23863800 - 23863958
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||||| |||||| || ||||||||||||||       ||||||||||||||||||  ||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 534  Q
    | |||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863900 aagtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 43779399 - 43779553
Alignment:
Q  105 atagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacg 204  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |  |||  ||||||||||||||  ||||||    
T  43779399 atagcttgtttggatgtgcgatggaacaagttttcttgcgtcccaaggcaaaaattgtcgtgatttggaaaggctactatatgtagcttcactgcaaacg 43779498  T
Q  205 tgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaaca 259  Q
    |||   |||||||||||||||  || |||| |||||| |||  || |||||||||    
T  43779499 tgagttcctgccgtgattttggtttgatgtggaaatggcactgcacagccaaaca 43779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 375 - 550
Target Start/End: Original strand, 37357915 - 37358094
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 470  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  471 gtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     ||| |||| |||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaa 37358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 452 - 550
Target Start/End: Complemental strand, 21604055 - 21603957
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    ||||||||||||| ||||  ||| |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 21603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 374 - 525
Target Start/End: Complemental strand, 4779759 - 4779608
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||       |||||||||||||| |||  ||    
T  4779759 gggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttata 4779660  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattg 525  Q
    | |||| |||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779659 aagtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 553
Target Start/End: Complemental strand, 4775808 - 4775629
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagca-ttggta 473  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | |||| || |||||||| |||||       ||||| ||||||| || ||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 553  Q
    | |||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| |||||| ||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtaccc 4775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca 438  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 527
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| |||||       |||||||||||||| |||   ||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt-taaa 25275718  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggt 527  Q
     |||| |||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275719 agtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 543
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  394 taatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 493  Q
    ||||| ||||||| |||| ||| ||| ||||||| || ||||||| |||||       |||||||||| ||| | |  |||  ||||||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  494 acactctaattggccaatggtatataccattggtaccttaatggtacaca 543  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 517
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   |||| || |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtata 517  Q
     |||| ||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  489 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 919447 - 919483
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccatt 410  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  919447 gggatagcacttgtgtaccataatggtttataccatt 919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 376 - 550
Target Start/End: Original strand, 19357261 - 19357434
Alignment:
Q  376 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 475  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  476 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaa 19357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 375 - 550
Target Start/End: Original strand, 11607532 - 11607707
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  |||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaa 11607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 375 - 543
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 543  Q
     |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 374 - 548
Target Start/End: Complemental strand, 1826433 - 1826259
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||||| |||||| || ||||||||  ||||       |||||||||||||||||    |    
T  1826433 gggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctaca 1826334  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1826333 aagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 414 - 550
Target Start/End: Original strand, 39570080 - 39570216
Alignment:
Q  414 caattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatgg 513  Q
    |||||| ||| ||||| ||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  514 tatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||||||||||| ||| |||||| |||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaa 39570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 452 - 550
Target Start/End: Complemental strand, 9827884 - 9827786
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||||||||||||  |||  ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaa 9827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 375 - 532
Target Start/End: Complemental strand, 33271787 - 33271630
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||| |||||| |||||||| || |||||       ||||||||||||||||||  | |    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatca 33271688  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtacctt 532  Q
     |||| |||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271687 agtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||||  |||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 35868569 - 35868428
Alignment:
Q  98 gtttcttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacg 197  Q
    |||||| |||||||||||||||||||| ||| |   | ||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||||      
T  35868569 gtttctaatagcttgtttggatgtgcggtggaagcagctttctcgcgtcccaaggcaaaaattgccgtgatttggaaaagctattatatgtagcttcagt 35868470  T
Q  198 acaaacgtgaccacctgccgtgattttgccttaatgtagaaat 240  Q
      |||||||    ||||||||||||||||||| |||| |||||    
T  35868469 gtaaacgtg-gttcctgccgtgattttgccttgatgtggaaat 35868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 13086820 - 13086753
Alignment:
Q  481 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086820 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||||  |||  ||| |||| | ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 29374536 - 29374625
Alignment:
Q  106 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttca 195  Q
    ||||||||||||||||||| ||| |   | ||||| || ||||||||||||||||||||||||||||| || |||  ||||||| |||||    
T  29374536 tagcttgtttggatgtgcggtggaagcagctttctcgcatcccaaggcaaaaattgccgtgatttggaaaagctactatatgtaacttca 29374625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 493
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  399 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 493  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||       ||||||||||||| ||||  ||| |||| |||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 547
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||| ||||||||||||  ||| |||| |||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattg 411  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 381 - 550
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  381 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 480  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||  ||  ||||     
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  481 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 22343510 - 22343335
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||| ||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaa 22343335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 400 - 547
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  400 tatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactc 499  Q
    |||||| ||||| ||||||| | |||| || ||||||||||||||       ||||||||||||||||||  ||| |||| ||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  500 taattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 377 - 547
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  377 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 476  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||| ||||||||| ||| |||       | ||||||||||||||||  ||| |    
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  477 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 51812087 - 51811912
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||||||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaa 51811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 392 - 550
Target Start/End: Complemental strand, 21260950 - 21260792
Alignment:
Q  392 cataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtg 491  Q
    |||||||||||||| ||||   |||||| |||||| || ||||||||||||||       ||||||||||||| ||||  ||| |||| |||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  492 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaa 21260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 55590644 - 55590480
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||| ||| ||||||||||||| ||||||  |||||| |||||||||||||||||| |||||       ||||||||||||||             
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag--------- 55590554  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
      ||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  55590553 --taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaa 55590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 556
Target Start/End: Original strand, 34829168 - 34829262
Alignment:
Q  462 aaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 556  Q
    ||||||||  ||| |||| ||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| || |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcccaa 34829262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||| ||||||| ||||  ||| |||| ||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 34934250 - 34934150
Alignment:
Q  106 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgt 205  Q
    ||||||||||||||||||| ||| | | ||||||| ||||||||| ||||||||||| || ||||||| || |||  |||||||| |||||  |||||||    
T  34934250 tagcttgtttggatgtgcggtggaataagttttctcgcgtcccaaagcaaaaattgcagttatttggaaaagctactatatgtagtttcactgcaaacgt 34934151  T
Q  206 g 206  Q
    |    
T  34934150 g 34934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 544
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  489 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 544  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 444  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 547
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||||||||||||||||  |||  ||| ||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 436
Target Start/End: Complemental strand, 35781083 - 35781021
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggca 436  Q
    |||||| |||||| ||| ||||||||||||||||||||  |||||| |||||| |||||||||    
T  35781083 gggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 550
Target Start/End: Complemental strand, 33174560 - 33174516
Alignment:
Q  507 ccaatggtatataccattggta-ccttaatggtacacaagtggaa 550  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaa 33174516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||| ||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 377 - 548
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  377 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 476  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| |||||| || ||||||||||||||       |||||||||||||||||   ||| |    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  477 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 379 - 550
Target Start/End: Complemental strand, 32676305 - 32676134
Alignment:
Q  379 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 478  Q
    |||| |||||||  |||||||||||||||||||| |||||| | |||| || ||||||||  ||||       ||||||||||||||||||  ||| |||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  479 atattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    | ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 32676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 374 - 548
Target Start/End: Original strand, 46435462 - 46435624
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    ||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||| ||| ||||||||||       |||||||||||||||||   ||    
T  46435462 gggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctata 46435561  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46435562 a------------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 399 - 550
Target Start/End: Complemental strand, 8462277 - 8462127
Alignment:
Q  399 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacact 498  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||       ||||| ||||||| ||||  |||  ||| ||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  499 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     ||||||  ||||| |||||||||||||||| |||||  |||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaa 8462127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 455 - 550
Target Start/End: Complemental strand, 25161402 - 25161307
Alignment:
Q  455 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    |||||||||| ||||  ||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaa 25161307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 550
Target Start/End: Original strand, 7214510 - 7214584
Alignment:
Q  476 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
    ||||||| | |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| |||||    
T  7214510 gtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaa 7214584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 15387156 - 15387215
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtgg 434  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  15387156 ggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 8382284 - 8382384
Alignment:
Q  159 ttgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaac 258  Q
    ||||||||||| ||| || |||  ||| ||||||||||  |||||||||   ||||||||||||||| ||| |||| |||||| |||| || ||||||||    
T  8382284 ttgccgtgattcggaaaagctactatacgtagcttcactgcaaacgtgagttcctgccgtgattttggcttgatgtggaaatggcaccgcacagccaaac 8382383  T
Q  259 a 259  Q
    |    
T  8382384 a 8382384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 547
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  499 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Complemental strand, 35998311 - 35998252
Alignment:
Q  489 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998311 gtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  376 gatagcacttgtgtaacataatggtatataccattg 411  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 7608541 - 7608602
Alignment:
Q  145 tcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtg 206  Q
    |||||||||||||||||  |||||||||| || |||  ||||||||||||||  ||||||||    
T  7608541 tcccaaggcaaaaattgatgtgatttggaaaagctactatatgtagcttcacagcaaacgtg 7608602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 374 - 547
Target Start/End: Original strand, 1211841 - 1212014
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||| |||||| |||||||||||||||||       ||||||||||||||||| | ||    
T  1211841 gggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgata 1211940  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1211941 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
     |||| |||||||||||||| ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 375 - 550
Target Start/End: Original strand, 32644836 - 32645009
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| ||||||||| |||  |||    
T  32644836 ggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-ttaa 32644933  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| ||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| ||||||    
T  32644934 agtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaa 32645009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 483 - 553
Target Start/End: Complemental strand, 11753232 - 11753162
Alignment:
Q  483 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 553  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggtaccc 11753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 10503256 - 10503301
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaatta 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503256 gggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 547
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  455 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||||||||||| |   || |||| ||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  393 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 444  Q
    |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 35341709 - 35341534
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaa 35341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 472  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  473 aatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    || |||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 48072560 - 48072387
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       || ||||||||||  |||  |||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataa 48072461  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
      ||| ||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||    
T  48072460 aataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaa 48072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 375 - 524
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccatt 524  Q
     |||| |||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 544
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  455 atcaaataaagcattggtaatgtaatattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 544  Q
    |||||||||||||||  ||| |||| |||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  393 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 444  Q
    ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  489 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 40893116 - 40893213
Alignment:
Q  452 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 40893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  484 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 374 - 548
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  374 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 473  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | ||||||||||||||       |||||||||||||||||   ||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    | |||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 25843172 - 25843013
Alignment:
Q  110 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 209  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||    
T  25843172 ttgtttggatgagcggtgccacaggttttcttgcatcccaaggcaaaaattgccgtgatttggaaacgctaccatgtgtagcttcactacaaacgtgacc 25843073  T
Q  210 acctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaca 269  Q
    |||||| |||||||||  || |||| ||||| |||||||| |||||||||| ||||||||    
T  25843072 acctgctgtgattttggtttgatgtggaaattacaccacacagccaaacaagcacttaca 25843013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 29282727 - 29282562
Alignment:
Q  103 ttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaa---ttgccgtgatttggacaacctaacatatgtagcttcacgac 199  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||   ||  ||||||||||| || | | ||||||||||||||| ||    
T  29282727 ttatagcttgtttggatgtgcgatggtacaggttttctcgcgtcccaaggcaaaaaaaatt--cgtgatttggaaaagcaaccatatgtagcttcactac 29282630  T
Q  200 aaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacactta 267  Q
    ||| | |||||||||| |||||||||  || |||| |||||||||||||| |||||||||| ||||||    
T  29282629 aaatgcgaccacctgcagtgattttggtttgatgtggaaatgacaccacacagccaaacaagcactta 29282562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 375 - 550
Target Start/End: Original strand, 11254026 - 11254200
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 556
Target Start/End: Original strand, 41179567 - 41179742
Alignment:
Q  381 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 480  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||| || |||||||| || ||       ||||| ||||||| ||||  ||| ||||     
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  481 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 556  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcccaa 41179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 375 - 541
Target Start/End: Complemental strand, 18168559 - 18168392
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 473  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18168559 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18168460  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 541  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168459 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 375 - 541
Target Start/End: Complemental strand, 18632116 - 18631949
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 473  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18632116 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18632017  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 541  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632016 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 540
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  398 ggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacac 497  Q
    |||| |||||||||   ||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  498 tctaattggccaatggtatataccattggtaccttaatggtac 540  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 42351691 - 42351815
Alignment:
Q  110 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 209  Q
    |||||||||||||   ||| ||| ||||||| |||||| || |||||||||||||||||||| | || | |  ||||||||||||||  |||||||||      
T  42351691 ttgtttggatgtgtcgtggaacaagttttctcgcgtcctaaagcaaaaattgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaat 42351790  T
Q  210 acctgccgtgattttgccttaatgt 234  Q
     ||||||||||||||| ||| ||||    
T  42351791 tcctgccgtgattttggcttgatgt 42351815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 32825954 - 32826005
Alignment:
Q  496 actctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 375 - 547
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 473  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||| ||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  474 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 34365 - 34192
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||| ||||||| ||||| |||||||| |||| | |||||| ||||||||||||| ||||||||||       |||||||||||||  |||  |||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataa 34268  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaa 34192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 11367 - 11193
Alignment:
Q  375 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 474  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  475 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 550  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  499 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 547
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  452 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 547  Q
    |||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 73168 - 73071
Alignment:
Q  452 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 548  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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