View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4903_low_5 (Length: 349)
Name: NF4903_low_5
Description: NF4903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4903_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 7076877 - 7076620
Alignment:
| Q |
19 |
gaggagcatgttagaatttgcaattttccatttatgagcacttataatgtgtgtgaatttggaaattatagattcttgaaagaaaaaacaagtataatga |
118 |
Q |
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| T |
7076877 |
gaggagcatgttagaatttgcaattttccatttatgagcacttataatgtgtgtgaatttggaaattatagattctttaaagaaaaaacaagtataatga |
7076778 |
T |
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| Q |
119 |
caccaaaaagacaattacatattttactagtaccatttttaaaatataataatatg-tttctcaaacaaaaacgtataatgacaccaaaaagacaaacat |
217 |
Q |
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| T |
7076777 |
caccaaaaagacaattacatattttactagtaccatttttaaaatataataatatgttttctcaaacaaaaacgtataatgacaccaaaaagacaaacat |
7076678 |
T |
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| Q |
218 |
taaggacggtacaatgttgtgtggcctttatgttttaagagaaatgatagttgaacaa |
275 |
Q |
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| T |
7076677 |
taaggacggtacaatgttgtgtggcctttatgttttaagagaaatgatatttgaacaa |
7076620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 7076397 - 7076446
Alignment:
| Q |
228 |
acaatgttgtgtggcctttatgttttaagagaaatgatagttgaacaacc |
277 |
Q |
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| T |
7076397 |
acaatgttgtgtgacctttatgttttaagagaaatgatatttgaacaacc |
7076446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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