View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904-Insertion-3 (Length: 462)
Name: NF4904-Insertion-3
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904-Insertion-3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 26017528 - 26017991
Alignment:
| Q |
8 |
ttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaacc |
107 |
Q |
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| T |
26017528 |
ttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcatcagtagaggaggtgttgctgaggccttaacgtcggatcacaaacc |
26017627 |
T |
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| Q |
108 |
ttcgaggaaagacgaaaaggaacggattgaaactcaggtaagtgat---------gatgatgatggcgattttcctgtttgtctttcgtaattgaaacct |
198 |
Q |
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| T |
26017628 |
ttcaaggaaagacgaaaaagaacgaattgaaactcaggtaattgattatgataatgatgatgatagcaatttttccgtttgtcgttggtaattgaaacct |
26017727 |
T |
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| Q |
199 |
ttgtttgtagtttaggatatcttaaaggtactaaattagttttgaannnnnnn----agggaggatatgttgatatgtgccgcggtgtttggagaatcca |
294 |
Q |
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| T |
26017728 |
ttgt----agtttaggatctcatgaaggtacttagttagttttgaaatttattttgtagggaggatatgtagatatgtgccgcggtgtttggagaatcca |
26017823 |
T |
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| Q |
295 |
aggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagcctgagaccaaagtactcagaattgaacctcaccat |
394 |
Q |
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| T |
26017824 |
aggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgatagcagaacctgagaccaaagtactcagaattgaacctcatcat |
26017923 |
T |
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| Q |
395 |
gacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatg |
462 |
Q |
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| T |
26017924 |
gactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatg |
26017991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 252 - 458
Target Start/End: Original strand, 26003035 - 26003241
Alignment:
| Q |
252 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
351 |
Q |
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| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26003134 |
T |
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| Q |
352 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
451 |
Q |
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| T |
26003135 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaat |
26003234 |
T |
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| Q |
452 |
taattgc |
458 |
Q |
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| T |
26003235 |
taattgc |
26003241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 26002718 - 26002856
Alignment:
| Q |
10 |
attaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaacctt |
109 |
Q |
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| T |
26002718 |
attagaaatggcaaccttgttatgtccaatgccggtgattgtcgtgctgtcatcagccatggaggtgctgctgaagccttaacatcagatcacaaacctt |
26002817 |
T |
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| Q |
110 |
cgaggaaagacgaaaaggaacggattgaaactcaggtaa |
148 |
Q |
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| T |
26002818 |
cgaggaaagacgaaaaagaacggattgagactcaggtaa |
26002856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 260 - 436
Target Start/End: Original strand, 30374295 - 30374471
Alignment:
| Q |
260 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagc |
359 |
Q |
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| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgtatcaagaggaattggagaccgacacttgaaacaatgggtgacagcggagc |
30374394 |
T |
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| Q |
360 |
ctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggta |
436 |
Q |
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| T |
30374395 |
ccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 30374048 - 30374166
Alignment:
| Q |
10 |
attaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaacctt |
109 |
Q |
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| T |
30374048 |
attaggaatggtaacttagttgtgtctaatgctggtgattgccgtgctgttattagtagaggaggggttgctgaggcactaacatctgatcaccgtcctt |
30374147 |
T |
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| Q |
110 |
cgaggaaagacgaaaagga |
128 |
Q |
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| T |
30374148 |
caagggaagacgaaaagga |
30374166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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