View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904-Insertion-4 (Length: 309)
Name: NF4904-Insertion-4
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 21650875 - 21650574
Alignment:
| Q |
8 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21650875 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
21650776 |
T |
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| Q |
108 |
aatgcatgccaaccactagatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaa |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21650775 |
aatgcatgccaaccactatatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaa |
21650676 |
T |
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| Q |
208 |
tttgagtcagcatactgttcttctcagagctcaaaataccttcatatgtaagatgaccagggaaacgctgcatattcaaaatgatatgcttgtattaatg |
307 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21650675 |
tttgagttagcataatgttcttctcagagctcaaaataccttcatatgtaagatgagcagggagacgctgcatattcaaaatgatatgcttgtattaatg |
21650576 |
T |
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| Q |
308 |
ca |
309 |
Q |
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|| |
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| T |
21650575 |
ca |
21650574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 14572352 - 14572653
Alignment:
| Q |
8 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14572352 |
aatgtcactttcgtagacaaagctaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
14572451 |
T |
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| Q |
108 |
aatgcatgccaaccactagatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaa |
207 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
14572452 |
aatgcatgcacaccactagatatgtatctcttataaggatctccttcttcagtcaaaatctcgtagttaaatgaatccactgcatctcgatctcgatcaa |
14572551 |
T |
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| Q |
208 |
tttgagtcagcatactgttcttctcagagctcaaaataccttcatatgtaagatgaccagggaaacgctgcatattcaaaatgatatgcttgtattaatg |
307 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14572552 |
tttgagtcagcataatgttcttctcagagctcaaaataccttcatatgtaagatgagtagggagacgctgcatattcaaaatgatatgcttgtattaatg |
14572651 |
T |
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| Q |
308 |
ca |
309 |
Q |
| |
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|| |
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| T |
14572652 |
ca |
14572653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 19784318 - 19784620
Alignment:
| Q |
8 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19784318 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaacaacaacctatcaccaacttcaacttggcttgccttaaca |
19784417 |
T |
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| Q |
108 |
aatgcatgccaaccactagatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaa |
207 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||| |||||||||||| |
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| T |
19784418 |
aatgcatgccaactactagatatgtatctcttataaggatctccttcttcagtaaaaacctcacagttaaatgcatcaactgcatcttgatctcgatcaa |
19784517 |
T |
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| Q |
208 |
tttgagtcagcat-actgttcttctcagagctcaaaataccttcatatgtaagatgaccagggaaacgctgcatattcaaaatgatatgcttgtattaat |
306 |
Q |
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||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
19784518 |
tttgagtcagcataaatgttcttctcaaagctcaaaataccttcatatgtaagatgagcagggagacgctgcatattcaaaaggatatgcttgtattaat |
19784617 |
T |
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| Q |
307 |
gca |
309 |
Q |
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||| |
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| T |
19784618 |
gca |
19784620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 145977 - 145695
Alignment:
| Q |
8 |
aatgtcactttcgtagacaaagcaaacgaatatgttcttatcataactctcaatggagaa-caacaacctatcaccaacttcaacttggcttgccttaac |
106 |
Q |
| |
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|||||||||||| |||||||| | |||| | || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
145977 |
aatgtcactttcatagacaaaacgaacgtagatattcttatcataattctcaatggagaaacaacaacctatcaccaacttcaacttgacttgccttaac |
145878 |
T |
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| Q |
107 |
aaatgcatgccaaccactagatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatca |
206 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||| |||| |||| | |||||| || ||||| ||| ||||||||| |||||| |||| |
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| T |
145877 |
aaatgcatgccaaccactagctatgtatctcttatgaggatctacttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatca |
145778 |
T |
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| Q |
207 |
atttgagtcagcatactgttcttctcagagctcaaaataccttcatatgtaagatgaccagggaaacgctgcatattcaaaat |
289 |
Q |
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| |||||| ||||| ||||||| ||||| ||||||| ||||||||||||||| ||| ||||| ||||| |||||||||||| |
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| T |
145777 |
agttgagtgagcatgatgttcttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaat |
145695 |
T |
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