View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904-Insertion-5 (Length: 234)
Name: NF4904-Insertion-5
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904-Insertion-5 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 6461850 - 6461624
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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| T |
6461850 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggttatttttgatgaatc |
6461751 |
T |
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| Q |
108 |
tagacccccaacatcttttaaaagtgatgaaacgatttcaccacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
207 |
Q |
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| T |
6461750 |
tagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
6461651 |
T |
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| Q |
208 |
tccaaaagccatgaatcaccaacaaca |
234 |
Q |
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| T |
6461650 |
tccaaaagccatgaatcaccaacaaca |
6461624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 6496822 - 6497048
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
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| T |
6496822 |
ctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatgaatc |
6496921 |
T |
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| Q |
108 |
tagacccccaacatcttttaaaagtgatgaaacgatttcaccacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
207 |
Q |
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| T |
6496922 |
tagactgccaacatcttttacaagtgatgaaacgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtt |
6497021 |
T |
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| Q |
208 |
tccaaaagccatgaatcaccaacaaca |
234 |
Q |
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| T |
6497022 |
tccaaaagccatgaatcaccaacaaca |
6497048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 6473061 - 6472847
Alignment:
| Q |
19 |
acctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagacccccaa |
118 |
Q |
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| T |
6473061 |
acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgctgttgttatcggtgatgactttagactctcaa |
6472962 |
T |
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| Q |
119 |
catcttttaaaagtgatgaaacgatttcaccacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtttccaaaagcca |
218 |
Q |
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| T |
6472961 |
catcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagcca |
6472862 |
T |
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| Q |
219 |
tgaatcaccaacaac |
233 |
Q |
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| T |
6472861 |
tgaatcaccaacaac |
6472847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 6520587 - 6520375
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccccc |
116 |
Q |
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| T |
6520587 |
aaacctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgttgatatatctgatgaatttagatcctc |
6520488 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttcaccacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtttccaaaagc |
216 |
Q |
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||||||||| ||||||| |||||| ||||| | | |||||||||| |||||||| | ||| |||| || ||| |||||||||||||| ||||| | |
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| T |
6520487 |
aacatctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaaac |
6520388 |
T |
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| Q |
217 |
catgaatcaccaa |
229 |
Q |
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| T |
6520387 |
catgaatcaccaa |
6520375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 9665319 - 9665190
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccccc |
116 |
Q |
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|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||| | |
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| T |
9665319 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
9665220 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttc |
146 |
Q |
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| T |
9665219 |
aacatcactcaaaagcgatgaaacgatttc |
9665190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 13536343 - 13536214
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccccc |
116 |
Q |
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|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||| | |
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| T |
13536343 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
13536244 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttc |
146 |
Q |
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|||||| | ||||| |||||||||||||| |
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| T |
13536243 |
aacatcactcaaaagcgatgaaacgatttc |
13536214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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