View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904-Insertion-6 (Length: 217)
Name: NF4904-Insertion-6
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904-Insertion-6 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 34448882 - 34449087
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
107 |
Q |
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| T |
34448882 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
34448981 |
T |
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| Q |
108 |
tgaaaatattgatcaactaattcactgaaagagcaaaattaagtaaaattggtaatttaaaaatatatatatgaatttgtaagcctacattttgtttgac |
207 |
Q |
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| T |
34448982 |
tgaaaatattgatcaactaattcactgatagagcaaaattaagcacaattggtaattttgaa----gtatatgaatttttaagcctacattttgtttgac |
34449077 |
T |
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| Q |
208 |
atattgtata |
217 |
Q |
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|||||||||| |
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| T |
34449078 |
atattgtata |
34449087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 34485468 - 34485575
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
107 |
Q |
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| T |
34485468 |
ccattagccttgtattcatcatatgttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgccagtttataaaactgtaaattaa |
34485567 |
T |
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| Q |
108 |
tgaaaata |
115 |
Q |
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| T |
34485568 |
tcaaaata |
34485575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 34460208 - 34460323
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
107 |
Q |
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| T |
34460208 |
ccattaaccttgtattcatcatatgttggaatatatcctgctttgcaccattttgcttcaaccaaataggctcgtgccactttataaaactgaaaacaaa |
34460307 |
T |
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| Q |
108 |
tgaaaatattgatcaa |
123 |
Q |
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| T |
34460308 |
taaaaatattgatcaa |
34460323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 34474152 - 34474264
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
107 |
Q |
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| T |
34474152 |
ccattagctttatattcatcatatgttggtataattccttcattgccccatttagtttccaccaagtaggattgtgccaatttatagaactgtaaattaa |
34474251 |
T |
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| Q |
108 |
tgaaaatattgat |
120 |
Q |
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| T |
34474252 |
tcaaaatattgat |
34474264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 6131257 - 6131161
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaat |
104 |
Q |
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| T |
6131257 |
ccattagctttgtattcattgtaagttggaataaatccttcattgcaccattttgcttcaaccaagtaggattttgccaatttataaaactgtaaat |
6131161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 16263 - 16367
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaa |
107 |
Q |
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|||||| |||||||||||| |||| |||| || ||| |||| | ||||||||||||||||| || || ||| | ||||||| |||||||||||||||| |
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| T |
16263 |
ccattaaccttgtattcattatatattggtatgaatc-ttcattccaccattttgattcaaccaaatatgattctaccaatttataaaactgtaaattaa |
16361 |
T |
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| Q |
108 |
tgaaaa |
113 |
Q |
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| |||| |
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| T |
16362 |
tcaaaa |
16367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 15976 - 15877
Alignment:
| Q |
8 |
ccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaac-aaagtaggatcgtgccaatttgtaaaactgtaaatta |
106 |
Q |
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| T |
15976 |
ccattagcgttatattcatcatatgttgta-taaatc-ttcattgcaccattttgattcaacaaaaatacaatcgtaccaacttataaaactgtgaatta |
15879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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