View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904-Insertion-7 (Length: 230)
Name: NF4904-Insertion-7
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904-Insertion-7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 9263653 - 9263430
Alignment:
| Q |
10 |
accaccaccagctcctccaaccacaactcctctcacggtggaaagcatccagggatgctaccgctcgcttcatcggagcattgcggtagagttgctgaaa |
109 |
Q |
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| T |
9263653 |
accaccagcagctcctccaaccacaactcctctcacggtggaaagcatccagggattctaccgctcgcttcgtcggagcattgcggtagagttgctgaaa |
9263554 |
T |
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| Q |
110 |
ggagcgacaagtttttgcatcgaagctgcattggggagtgccaagtcatattctgtttttcaa---ttagtttcttaaactttacaagttaaacacaatt |
206 |
Q |
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| T |
9263553 |
ggagcgacaagtttttgcatcggagctgcattggtaagtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaaccacaatt |
9263454 |
T |
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| Q |
207 |
catcttgcagacttatttgatcaa |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
9263453 |
catcttgcagacttatttgatcaa |
9263430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 9267935 - 9267709
Alignment:
| Q |
8 |
caaccaccaccagctcctccaaccacaactcctctcacggtggaaagcatccagggatgctaccgctcgcttcatcggagcattgcggtagagttgctga |
107 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
9267935 |
caaccaccaccagctcctccaaccacaactcctgtcacggtggaaagcatccagggatgctaccgctcgcttcgtcggagcattgggggagagttgctga |
9267836 |
T |
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| Q |
108 |
aaggagcgacaagtttttgcatcgaagctgcattggggagtgccaagtcatattctgtttttcaa---ttagtttcttaaactttacaagttaa-acaca |
203 |
Q |
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| T |
9267835 |
aaggagcgacaagtttttgcatcggagctgcattggtgagtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaactcaca |
9267736 |
T |
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| Q |
204 |
attcatcttgcagacttatttgatcaa |
230 |
Q |
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| T |
9267735 |
attcatcttgcagacttatttgatcaa |
9267709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 9262979 - 9263195
Alignment:
| Q |
18 |
cagctcctccaaccacaactcctctcacggtggaaagcatccagggatgctaccgctcgcttcatcggagcattgcggtagagttgctgaaaggagcgac |
117 |
Q |
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| T |
9262979 |
cagctcctccaaccacaactcctctcacggtgaaaagaatccagggatgctaccgctcgctttgtcggagcattgcggtagagttgctgaaaggagcgac |
9263078 |
T |
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| Q |
118 |
aagtttttgcatcgaagctgcattggggagtgccaagtcatattctgtttttcaa---ttagtttcttaaactttacaagttaa-acacaattcatcttg |
213 |
Q |
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| T |
9263079 |
aagttttttcatccgagctacattggtgagtgccaattcatattctgttttttaatttttagtttcttaaactttacaagttaactcacaattcatcttg |
9263178 |
T |
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| Q |
214 |
cagacttatttgatcaa |
230 |
Q |
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| T |
9263179 |
cagacttatttgatcaa |
9263195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 9267505 - 9267625
Alignment:
| Q |
10 |
accaccaccagctcctccaaccacaactcctctcacggtggaaagcatccagggatgctaccgctcgcttcatcggagcattgcggtagagttgctgaaa |
109 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
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| T |
9267505 |
accaccagcagctcctccaaccacaactcctctcaaggtggaaagcatccagggatgctaccgctcgcttagtcgaagcattgcggaagagttactgaaa |
9267604 |
T |
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| Q |
110 |
ggagcgacaagtttttgcatc |
130 |
Q |
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| T |
9267605 |
ggagcgacaagtttttgcatc |
9267625 |
T |
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