View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904_high_1 (Length: 370)
Name: NF4904_high_1
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904_high_1 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 6623009 - 6623345
Alignment:
| Q |
20 |
gaaatcataattttcagcacttgaatttcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagttta |
119 |
Q |
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| T |
6623009 |
gaaatcataattttcagcacttgaatatcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagttta |
6623108 |
T |
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| Q |
120 |
taaaatcatattcctattgataatttccagttttcttcaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctcagtga |
219 |
Q |
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| T |
6623109 |
taaaatcgtattcatattgataatttccagttttcttgaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctcagtga |
6623208 |
T |
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| Q |
220 |
aagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtc |
319 |
Q |
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| T |
6623209 |
aagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattcccctcctgaatttctcttcagcagcagaattgcaactcttgtc |
6623308 |
T |
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| Q |
320 |
tctgaagagtcatcgtccttcacttaagtcctttgtt |
356 |
Q |
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| T |
6623309 |
tctgaagagtcatcgtccttcacttaagtcctttgtt |
6623345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 90605 - 90415
Alignment:
| Q |
20 |
gaaatcataattttcagcacttgaatttcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagttta |
119 |
Q |
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| T |
90605 |
gaaatcatcgttttcagcacttggatttcaatactgccgtcttctcttggatttcaatgctgttgatgttcttcattcagcaatgcacaacacgagttta |
90506 |
T |
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| Q |
120 |
taaaatcatattcctattgataatttccagttttcttcaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatctca |
215 |
Q |
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| T |
90505 |
taaaatcatattccttcggatgatttccagtttt----aagttttgatacataaattagtaaatctttt-cagtggttacatatttttgtatctca |
90415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 90417 - 90327
Alignment:
| Q |
267 |
tcatgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgttc |
357 |
Q |
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| T |
90417 |
tcatgaattcccatccggaatttctcttcaacagcagaactgcaactcttgtctctgaagagtcatcatccttcacttaagtcctttgttc |
90327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 28751782 - 28751910
Alignment:
| Q |
177 |
agtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattc |
276 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | || | |
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| T |
28751782 |
agtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagttcgtcgatac |
28751881 |
T |
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| Q |
277 |
ccatcctgaatttctcttcagcagcagaa |
305 |
Q |
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| T |
28751882 |
ccatccgaaacttctcttcaacagcagaa |
28751910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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