View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4904_high_2 (Length: 342)

Name: NF4904_high_2
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4904_high_2
NF4904_high_2
[»] chr2 (37 HSPs)
chr2 (18-326)||(1633520-1633829)
chr2 (166-244)||(41407170-41407248)
chr2 (188-246)||(15757811-15757869)
chr2 (188-241)||(12795664-12795717)
chr2 (179-244)||(39659644-39659709)
chr2 (188-239)||(10619350-10619401)
chr2 (188-242)||(43570297-43570351)
chr2 (190-242)||(38010283-38010335)
chr2 (179-242)||(2416194-2416257)
chr2 (193-244)||(4606860-4606911)
chr2 (189-240)||(26626759-26626810)
chr2 (188-243)||(36534668-36534723)
chr2 (197-247)||(41812228-41812278)
chr2 (179-240)||(16451021-16451082)
chr2 (166-244)||(41293354-41293434)
chr2 (154-247)||(42659262-42659355)
chr2 (155-235)||(3311922-3312002)
chr2 (188-236)||(5599195-5599243)
chr2 (193-244)||(41880642-41880694)
chr2 (193-244)||(5745560-5745611)
chr2 (208-247)||(15305522-15305561)
chr2 (193-240)||(41851408-41851455)
chr2 (215-245)||(2195848-2195878)
chr2 (208-242)||(14220963-14220997)
chr2 (208-242)||(40835435-40835469)
chr2 (208-246)||(43036507-43036545)
chr2 (217-247)||(43279703-43279733)
chr2 (211-244)||(7043880-7043913)
chr2 (189-242)||(9395011-9395064)
chr2 (179-244)||(19608751-19608816)
chr2 (153-246)||(23974600-23974693)
chr2 (179-244)||(40682499-40682564)
chr2 (188-244)||(41702320-41702377)
chr2 (196-244)||(12194821-12194869)
chr2 (188-240)||(27695732-27695784)
chr2 (208-244)||(28792365-28792401)
chr2 (202-242)||(40279082-40279122)
[»] chr7 (34 HSPs)
chr7 (153-243)||(21568738-21568828)
chr7 (189-247)||(27863843-27863901)
chr7 (181-242)||(33678663-33678724)
chr7 (179-247)||(38500054-38500122)
chr7 (189-242)||(47795838-47795891)
chr7 (188-247)||(33128623-33128682)
chr7 (209-247)||(9210494-9210532)
chr7 (188-242)||(18865195-18865249)
chr7 (166-243)||(3308375-3308452)
chr7 (208-247)||(30571088-30571127)
chr7 (189-247)||(40252242-40252300)
chr7 (179-244)||(23989620-23989685)
chr7 (188-244)||(39393710-39393766)
chr7 (188-244)||(46139821-46139877)
chr7 (188-244)||(46280404-46280460)
chr7 (208-247)||(119775-119814)
chr7 (153-240)||(4970898-4970985)
chr7 (208-247)||(5947027-5947066)
chr7 (179-250)||(33672951-33673022)
chr7 (212-247)||(40377997-40378032)
chr7 (192-247)||(45263959-45264014)
chr7 (172-242)||(20881755-20881825)
chr7 (213-243)||(28341234-28341264)
chr7 (153-247)||(46078013-46078107)
chr7 (178-247)||(19131159-19131228)
chr7 (208-245)||(19131238-19131275)
chr7 (179-240)||(20526646-20526707)
chr7 (188-236)||(17248434-17248482)
chr7 (188-236)||(20189153-20189201)
chr7 (212-244)||(28210324-28210356)
chr7 (179-239)||(33552947-33553007)
chr7 (187-243)||(38138623-38138679)
chr7 (211-243)||(39630109-39630141)
chr7 (188-244)||(46407429-46407485)
[»] chr8 (29 HSPs)
chr8 (153-247)||(1058184-1058278)
chr8 (154-247)||(14956406-14956499)
chr8 (188-244)||(40980999-40981055)
chr8 (189-252)||(29819026-29819089)
chr8 (188-242)||(2833465-2833520)
chr8 (188-242)||(2840239-2840294)
chr8 (188-242)||(2844926-2844981)
chr8 (194-244)||(4389822-4389873)
chr8 (208-247)||(35534774-35534813)
chr8 (153-247)||(41821425-41821517)
chr8 (189-239)||(9130456-9130506)
chr8 (153-247)||(28763239-28763333)
chr8 (189-243)||(36963491-36963545)
chr8 (179-243)||(37353374-37353439)
chr8 (210-250)||(11861686-11861726)
chr8 (188-244)||(34236041-34236097)
chr8 (188-236)||(40637438-40637486)
chr8 (189-240)||(5404500-5404551)
chr8 (172-239)||(9956931-9956998)
chr8 (208-247)||(18133552-18133591)
chr8 (189-236)||(21119072-21119119)
chr8 (197-243)||(29169030-29169076)
chr8 (201-243)||(29205676-29205718)
chr8 (211-249)||(38602233-38602271)
chr8 (179-244)||(26215375-26215440)
chr8 (179-220)||(40859844-40859885)
chr8 (188-232)||(10120648-10120692)
chr8 (215-243)||(12976086-12976114)
chr8 (191-231)||(15179034-15179074)
[»] chr1 (47 HSPs)
chr1 (179-249)||(5894289-5894359)
chr1 (153-247)||(37473265-37473359)
chr1 (188-243)||(47498978-47499033)
chr1 (179-256)||(33541844-33541921)
chr1 (153-246)||(41505554-41505647)
chr1 (188-244)||(27820475-27820531)
chr1 (192-243)||(24562452-24562503)
chr1 (152-247)||(38247320-38247414)
chr1 (190-256)||(33546597-33546663)
chr1 (188-242)||(51688576-51688630)
chr1 (188-242)||(6556889-6556943)
chr1 (166-244)||(14331658-14331736)
chr1 (189-247)||(41195340-41195398)
chr1 (188-241)||(27146383-27146436)
chr1 (188-241)||(30191863-30191916)
chr1 (208-253)||(34795569-34795614)
chr1 (188-244)||(1510454-1510510)
chr1 (152-256)||(5741519-5741623)
chr1 (188-247)||(14576798-14576857)
chr1 (180-247)||(22343954-22344021)
chr1 (197-242)||(4920894-4920940)
chr1 (197-247)||(17603525-17603575)
chr1 (188-242)||(30581683-30581737)
chr1 (197-247)||(49938614-49938664)
chr1 (178-243)||(473036-473101)
chr1 (186-242)||(8081769-8081825)
chr1 (189-240)||(24417817-24417869)
chr1 (204-240)||(27970424-27970460)
chr1 (188-247)||(17727240-17727299)
chr1 (197-243)||(34619506-34619553)
chr1 (190-244)||(35058893-35058948)
chr1 (193-247)||(43230894-43230948)
chr1 (208-250)||(45661260-45661302)
chr1 (190-240)||(51695631-51695681)
chr1 (191-244)||(9572246-9572299)
chr1 (188-221)||(27976372-27976405)
chr1 (179-244)||(45975569-45975634)
chr1 (152-256)||(5720838-5720942)
chr1 (208-240)||(7069183-7069215)
chr1 (210-242)||(8382621-8382653)
chr1 (192-243)||(10665960-10666014)
chr1 (180-240)||(29904633-29904693)
chr1 (188-243)||(31517872-31517928)
chr1 (197-244)||(33527275-33527323)
chr1 (208-244)||(45855730-45855766)
chr1 (191-242)||(48064189-48064241)
chr1 (208-244)||(51190726-51190762)
[»] chr3 (37 HSPs)
chr3 (188-242)||(30956771-30956825)
chr3 (188-242)||(30972583-30972637)
chr3 (166-244)||(31365395-31365473)
chr3 (153-247)||(35959566-35959660)
chr3 (191-244)||(46886835-46886888)
chr3 (166-241)||(1508704-1508779)
chr3 (153-247)||(20880343-20880437)
chr3 (188-247)||(42800058-42800117)
chr3 (188-248)||(944358-944419)
chr3 (188-240)||(39442321-39442373)
chr3 (179-242)||(402667-402730)
chr3 (188-247)||(34034037-34034096)
chr3 (179-242)||(34235202-34235265)
chr3 (188-241)||(2719341-2719394)
chr3 (189-242)||(20003430-20003483)
chr3 (188-253)||(24684968-24685033)
chr3 (208-244)||(849551-849587)
chr3 (208-244)||(3846046-3846082)
chr3 (213-245)||(10704713-10704745)
chr3 (179-235)||(23815941-23815997)
chr3 (188-236)||(28240213-28240261)
chr3 (188-244)||(31403237-31403293)
chr3 (208-244)||(38901965-38902001)
chr3 (208-244)||(42747916-42747952)
chr3 (188-244)||(47132246-47132302)
chr3 (189-240)||(34610942-34610993)
chr3 (179-242)||(35328289-35328351)
chr3 (153-244)||(53789571-53789662)
chr3 (210-243)||(18405985-18406018)
chr3 (166-219)||(30443658-30443711)
chr3 (189-238)||(47249604-47249653)
chr3 (188-224)||(5435731-5435767)
chr3 (188-236)||(12833871-12833919)
chr3 (179-247)||(20170389-20170457)
chr3 (188-243)||(27896317-27896373)
chr3 (179-238)||(35127497-35127557)
chr3 (212-252)||(39602337-39602377)
[»] chr5 (36 HSPs)
chr5 (153-250)||(3735601-3735698)
chr5 (188-244)||(9202883-9202939)
chr5 (179-239)||(19460512-19460572)
chr5 (188-242)||(24030547-24030601)
chr5 (190-247)||(7706126-7706183)
chr5 (179-247)||(32372490-32372558)
chr5 (166-241)||(7319134-7319209)
chr5 (190-247)||(39477827-39477884)
chr5 (179-243)||(28776855-28776919)
chr5 (179-227)||(39105360-39105408)
chr5 (179-246)||(16938003-16938070)
chr5 (188-247)||(25461900-25461959)
chr5 (162-245)||(32941339-32941421)
chr5 (188-243)||(40426632-40426687)
chr5 (179-245)||(42573905-42573972)
chr5 (181-247)||(25460958-25461024)
chr5 (179-240)||(1465145-1465206)
chr5 (208-245)||(36145200-36145237)
chr5 (209-246)||(37954580-37954617)
chr5 (208-249)||(42500374-42500415)
chr5 (188-244)||(24029937-24029993)
chr5 (179-238)||(39247984-39248044)
chr5 (191-226)||(3569097-3569132)
chr5 (179-242)||(10639825-10639887)
chr5 (189-224)||(10772014-10772049)
chr5 (188-243)||(13697904-13697959)
chr5 (189-244)||(31051767-31051822)
chr5 (188-242)||(12554334-12554388)
chr5 (178-244)||(32703573-32703639)
chr5 (189-242)||(3520302-3520355)
chr5 (172-233)||(7984868-7984929)
chr5 (194-243)||(12433521-12433570)
chr5 (190-242)||(40439102-40439153)
chr5 (197-241)||(40452189-40452233)
chr5 (208-244)||(42583493-42583529)
chr5 (188-220)||(42646548-42646580)
[»] chr6 (17 HSPs)
chr6 (188-244)||(264250-264306)
chr6 (166-247)||(6538383-6538464)
chr6 (190-247)||(34430582-34430639)
chr6 (153-244)||(24626164-24626255)
chr6 (188-244)||(35069431-35069487)
chr6 (189-239)||(9632785-9632835)
chr6 (194-240)||(10645470-10645516)
chr6 (194-243)||(14929604-14929653)
chr6 (192-236)||(8365113-8365157)
chr6 (210-242)||(13907491-13907523)
chr6 (212-247)||(31623446-31623481)
chr6 (188-243)||(32014097-32014152)
chr6 (208-242)||(9604741-9604775)
chr6 (153-226)||(18076083-18076156)
chr6 (188-244)||(658580-658636)
chr6 (188-244)||(23063663-23063719)
chr6 (188-247)||(30926406-30926463)
[»] scaffold0018 (1 HSPs)
scaffold0018 (153-247)||(157973-158067)
[»] chr4 (26 HSPs)
chr4 (153-243)||(17204008-17204098)
chr4 (188-243)||(27028-27083)
chr4 (152-245)||(18814960-18815052)
chr4 (154-247)||(24169127-24169220)
chr4 (195-247)||(45935365-45935417)
chr4 (191-247)||(50662870-50662926)
chr4 (179-242)||(11389407-11389470)
chr4 (189-244)||(35571763-35571818)
chr4 (208-247)||(39603596-39603635)
chr4 (187-246)||(44797759-44797818)
chr4 (188-242)||(44863097-44863151)
chr4 (153-247)||(50681199-50681293)
chr4 (179-244)||(35571958-35572022)
chr4 (188-240)||(3155486-3155538)
chr4 (194-249)||(47771869-47771925)
chr4 (188-243)||(25904359-25904414)
chr4 (153-247)||(43505824-43505916)
chr4 (208-246)||(2243944-2243982)
chr4 (179-244)||(26520355-26520421)
chr4 (190-240)||(44138442-44138492)
chr4 (194-242)||(17823019-17823068)
chr4 (188-247)||(53294235-53294293)
chr4 (208-244)||(4212811-4212847)
chr4 (208-244)||(27330190-27330226)
chr4 (194-242)||(47119086-47119134)
chr4 (210-242)||(49202527-49202559)
[»] scaffold0050 (1 HSPs)
scaffold0050 (179-242)||(58475-58538)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 1633520 - 1633829
Alignment:
Q  18 attttcataagttctccaatatttcacaagnnnnnnncggcttattttcctaagttctacaatatactagcttttaaaatcggcttatagcatatnnnnn 117  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1633520 attttcataagttctccaatatttcacaagtttttttcggcttattttcctaagttctacaatatactagcttttaaaatcggcttatagcatataaaaa 1633619  T
Q  118 nn-tctaactttattttatctttgnnnnnnnaaatttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataag 216  Q
       |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1633620 aaatctaactttattttatctttgtttttttaaatttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataag 1633719  T
Q  217 ctgcaaataagctgtttatccaaacaggccccaactcaactgacaattggcgatattgttaggttggacactttcattgaggtttgaaatttgaacccag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1633720 ctgcaaataagctgtttatccaaacaggccccaactcaactgacaattggcgatattgttaggttggacactttcactgaggtttgaaatttgaacccag 1633819  T
Q  317 gacctcacag 326  Q
    ||||||||||    
T  1633820 gacctcacag 1633829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 41407248 - 41407170
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||| | |||||||  ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  41407248 tatgtaagcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacagg 41407170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 15757811 - 15757869
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  15757811 cttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaacaggcc 15757869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 12795717 - 12795664
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  12795717 cttatcatgataagcacttatgctataaactgcaaataaactgtttatccaaac 12795664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 39659644 - 39659709
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  |||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||    
T  39659644 acataagcgcttatcatgataagcatttgtgctctaagctgcaaataagttgtttatccaaacagg 39659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 10619350 - 10619401
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  10619350 cttatcatgataagcacttctactataaactacaaataagctgtttatccaa 10619401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 43570351 - 43570297
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||    
T  43570351 cttatcatgataagtgcttgtgctataagctgcaaataagctgtttacccaaaca 43570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 38010335 - 38010283
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||| |||||    
T  38010335 tatcatgataagcacttgtgatataagctgcaaataagttgtttatctaaaca 38010283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 2416257 - 2416194
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  |||| ||||||||| |||| |||||||||||| ||||||| ||||||||||||||    
T  2416257 acataagcacttaacatgataagaacttgtgctataagctgaaaataagttgtttatccaaaca 2416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 4606911 - 4606860
Alignment:
Q  193 catgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||| || |||||||||| |||||| ||||||||||||||||    
T  4606911 catgataagcacttgtgttataagctgcgaataagttgtttatccaaacagg 4606860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 26626810 - 26626759
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  26626810 ttatcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 36534723 - 36534668
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||||||||| || ||||| ||| ||||||| |||||||||||||||    
T  36534723 cttatcatgataagcacttatgttataaactgaaaataagttgtttatccaaacag 36534668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 41812228 - 41812278
Alignment:
Q  197 ataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| ||||| |||||||| ||||||||||| |||||||||||||||||||    
T  41812228 ataatcacttgtgctataaactgcaaataagttgtttatccaaacaggccc 41812278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 16451082 - 16451021
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    ||||||| |||||||||||| ||  ||| |||| ||||||||||||||| ||||||||||||    
T  16451082 acataagctcttatcatgatcagtgcttatgctgtaagctgcaaataagatgtttatccaaa 16451021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 41293354 - 41293434
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgc--aaataagctgtttatccaaacagg 244  Q
    |||||||||| | ||||| |  |||| ||||||| |||||| |||||||||||||  ||||||| ||||||||||||||||    
T  41293354 tatgtaagcttacacatacgcgcttaccatgatacgcacttgtgctataagctgcaaaaataagttgtttatccaaacagg 41293434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 42659262 - 42659355
Alignment:
Q  154 ataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||| ||| |||||||||| | |||||||  ||||||||||||||    | |||||| ||||||||||||| |  ||||||||||||||||    
T  42659262 ataaaaatagcttatgtaagcttatacataagcgcttatcatgataagtgtgtgtgctattagctgcaaataagtttcttatccaaacaggccc 42659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 3312002 - 3311922
Alignment:
Q  155 taaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttat 235  Q
    |||||||||| |||||| ||| | |||||||  ||| ||||||||| ||||| |||||||||||| ||||||  |||||||    
T  3312002 taaaaacagcttatgtatgcttatacataagcacttttcatgataatcacttgtgctataagctgaaaataatttgtttat 3311922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 5599195 - 5599243
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  5599195 cttattatgataagcacttatgctataagctgcaaataagttttttatc 5599243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 41880642 - 41880694
Alignment:
Q  193 catgataagcacttctgctataagctgcaaa-taagctgtttatccaaacagg 244  Q
    |||||||||| ||| |||||||||||||||| |||| ||||||||||||||||    
T  41880642 catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaacagg 41880694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 5745560 - 5745611
Alignment:
Q  193 catgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||| | ||| || ||||||||||||||||||| ||||||||||||||    
T  5745560 catgataaacgcttgtgatataagctgcaaataagctctttatccaaacagg 5745611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 15305561 - 15305522
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  15305561 tgctaaaagttgcaaataagctgtttatccaaacaggccc 15305522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 41851455 - 41851408
Alignment:
Q  193 catgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  41851455 catgataagcgcttgtgctatatgctgcaaataagatgtttatccaaa 41851408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 2195878 - 2195848
Alignment:
Q  215 agctgcaaataagctgtttatccaaacaggc 245  Q
    |||||||||||||||||||||||||||||||    
T  2195878 agctgcaaataagctgtttatccaaacaggc 2195848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 14220963 - 14220997
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||| |||||||||||||||||||||||    
T  14220963 tgctataagctacaaataagctgtttatccaaaca 14220997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 40835469 - 40835435
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||||||||| ||||||||||||||    
T  40835469 tgctataagctgcaaataagttgtttatccaaaca 40835435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 43036545 - 43036507
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  43036545 tgctataagcggcaaataagttgtttatccaaacaggcc 43036507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 43279703 - 43279733
Alignment:
Q  217 ctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||||||||||||||||||    
T  43279703 ctgcaaataagctgtttatccaaacaggccc 43279733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 7043880 - 7043913
Alignment:
Q  211 tataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||||| ||||||||||||||||    
T  7043880 tataagctgcaaataagttgtttatccaaacagg 7043913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 9395064 - 9395011
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||  ||| |||||||||| ||||||||||| | ||||||||||    
T  9395064 ttatcatgataagagcttgtgctataagccgcaaataagctatgtatccaaaca 9395011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 19608751 - 19608816
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  ||||||||| || |  ||| |||||||||||||||||| ||||| ||||||||||||    
T  19608751 acataagtgcttatcatggtatgtgcttgtgctataagctgcaaatatgctgtatatccaaacagg 19608816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 23974600 - 23974693
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    |||||||| ||| || ||||||| |  ||||||  |||||| || | | ||||| || |||||||| ||||||||||| |||||||||||||||    
T  23974600 tataaaaatagcttaagtaagcttatgcataagtgcttatcttgcttatcacttgtgatataagctccaaataagctgcttatccaaacaggcc 23974693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 40682499 - 40682564
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  |||| |||||||||| |||  ||||| || |||||||||| ||||||||||||||||    
T  40682499 acataagcgcttaccatgataagcgcttgcgctatgagttgcaaataagatgtttatccaaacagg 40682564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 41702320 - 41702377
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaat-aagctgtttatccaaacagg 244  Q
    ||||||||||||||   || |||||||||||| |||| ||||||||||||||||||||    
T  41702320 cttatcatgataagtgtttttgctataagctgaaaattaagctgtttatccaaacagg 41702377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 12194869 - 12194821
Alignment:
Q  196 gataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |||||||||||  ||||||| |||||| |||||||||    
T  12194869 gataagcacttgtgctataagctataaataagttgtttaaccaaacagg 12194821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 27695732 - 27695784
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    ||||||||||||||   || ||||||||||| |||||||| ||||||||||||    
T  27695732 cttatcatgataagtgtttgtgctataagctacaaataagttgtttatccaaa 27695784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 28792365 - 28792401
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  28792365 tgctataagctgcaagtaagctttttatccaaacagg 28792401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 40279122 - 40279082
Alignment:
Q  202 cacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||| ||||||||||| |||||||| ||||||||||||||    
T  40279122 cacttgtgctataagctacaaataagttgtttatccaaaca 40279082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 21568738 - 21568828
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||||| ||| |||| ||||| | |||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  21568738 tataaaaatagcttatgcaagcttatacataagtgcttatcatgataagcacttatgctataagctgcaaacaagctgtttatccaaacag 21568828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 27863843 - 27863901
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  27863843 ttatcatgataagcacttgtgctataagctacaaataagttgtttatccaaacaggccc 27863901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 33678724 - 33678663
Alignment:
Q  181 ataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  33678724 ataagctcttatcatgataagcacttgtgctataagatgcaaataagctgtttgtccaaaca 33678663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 38500054 - 38500122
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||  ||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||    
T  38500054 acataagcgcttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacaggccc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 47795891 - 47795838
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  47795891 ttatcatgataagcgcttatgctataagctgcaaataagctgtttatctaaaca 47795838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 33128682 - 33128623
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||   || |||| |||||||||||||||||||||||||||||||||||    
T  33128682 cttatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaacaggccc 33128623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 9210532 - 9210494
Alignment:
Q  209 gctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9210532 gctataagctgcaaataagctgtttatccaaacaggccc 9210494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 18865195 - 18865249
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||||  || |||||||||||||||||||| ||||||||||||||    
T  18865195 cttatcatgataagcgtttgtgctataagctgcaaataagttgtttatccaaaca 18865249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 3308375 - 3308452
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||| || | |||||||  |||||||||| ||| |||| ||||||||||| ||||||||||||||||| ||||||    
T  3308375 tatgtaaccttatacataagcacttatcatgaaaagtacttgtgctataagctccaaataagctgtttatctaaacag 3308452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 30571088 - 30571127
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30571088 tgctataagctgcaaataagctgtttatccaaacacgccc 30571127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 40252242 - 40252300
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||| ||||| || | |||||||||||||| ||||| |||||||||||||||||||    
T  40252242 ttatcataataagaacatgtgctataagctgcatataaggtgtttatccaaacaggccc 40252300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 23989620 - 23989685
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||| ||||||||||||||| | | | |||||||||||||||||| ||||  ||||||||||    
T  23989620 acataagaacttatcatgataagcgcgtgtactataagctgcaaataagttgttactccaaacagg 23989685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 39393710 - 39393766
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |   ||| ||||||||||||||||||||||||| |||||||||||    
T  39393710 cttatcatgatcaaagcttgtgctataagctgcaaataagctgttcatccaaacagg 39393766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 46139877 - 46139821
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||  ||| || ||||||||||||||||| |||||| |||||||||    
T  46139877 cttatcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaacagg 46139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 46280404 - 46280460
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||| | ||| |||||||||||  |||||| |||||||||||||||||    
T  46280404 cttatcatgataaacgcttgtgctataagctataaataaactgtttatccaaacagg 46280460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 119814 - 119775
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  119814 tgctataagctgcagataagctttttatccaaacaggccc 119775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 4970898 - 4970985
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||| ||| ||| |||||||||| | ||||||   ||||||||| || | |||| | ||||||||||||||||||| |||||||||||    
T  4970898 tatagaaatagcttatgtaagcttatacataaccgcttatcatggtagggactttttctataagctgcaaataagccgtttatccaaa 4970985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 5947066 - 5947027
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  5947066 tgctataagcttcaaataagctatttatccaaacaggccc 5947027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 33673022 - 33672951
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaa 250  Q
    |||||||  |||||||| ||||  |||| |||||||||||||||||||   ||||||||||||||| |||||    
T  33673022 acataagcgcttatcataataaatacttgtgctataagctgcaaataaatagtttatccaaacagggcccaa 33672951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 40377997 - 40378032
Alignment:
Q  212 ataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||| |||||||||||||||||||    
T  40377997 ataagctgcaaataagttgtttatccaaacaggccc 40378032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 45264014 - 45263959
Alignment:
Q  192 tcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||| ||| ||  |||||| ||||||||| |||||||||||||||||||    
T  45264014 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 45263959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 20881755 - 20881825
Alignment:
Q  172 agctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||| |||||||| ||||||||||||||  ||| |||||||| || |||||||| |||| ||| |||||    
T  20881755 agctcatacataagagcttatcatgataagtgcttgtgctataaactacaaataagttgttcatctaaaca 20881825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 28341234 - 28341264
Alignment:
Q  213 taagctgcaaataagctgtttatccaaacag 243  Q
    |||||||||||||||||||||||||||||||    
T  28341234 taagctgcaaataagctgtttatccaaacag 28341264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 46078107 - 46078013
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| | | |||||||||| | |||||||  |||||||||||| |   || |||| |||| |||| ||||||||||| |||||||||||||    
T  46078107 tataaaaataacttatgtaagcttatacataagcgcttatcatgatatgtgtttgtgctttaagttgcatataagctgtttgtccaaacaggccc 46078013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 19131228 - 19131159
Alignment:
Q  178 aacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||  |||||||| | |||| |||  ||| ||||||||||| |||||||||||| ||||||||||    
T  19131228 aacataagcacttatcataagaagcgcttgagctgtaagctgcaaacaagctgtttatcgaaacaggccc 19131159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 19131275 - 19131238
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggc 245  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  19131275 tgctataagcttcaaacaagctgtttatccaaacaggc 19131238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 20526646 - 20526707
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||| || ||||| ||||||| || ||||||||| |||||||||  ||||||||||||    
T  20526646 acataagagctaatcattataagcatttgtgctataaggtgcaaataatgtgtttatccaaa 20526707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 17248482 - 17248434
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    |||||||||||||| |||| ||||||||| || ||||||| ||||||||    
T  17248482 cttatcatgataagaacttgtgctataagttgtaaataaggtgtttatc 17248434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 20189153 - 20189201
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||||||||||||||||| ||  |||||||||||||||| ||| ||||    
T  20189153 cttatcatgataagcacttatgtcataagctgcaaataagttgtgtatc 20189201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 28210356 - 28210324
Alignment:
Q  212 ataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||||| ||||||||||||||||    
T  28210356 ataagctgcaaataagttgtttatccaaacagg 28210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 33552947 - 33553007
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    |||||||  ||||||||| ||||  ||| ||| |||||||||||||||| |||||||||||    
T  33552947 acataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 38138623 - 38138679
Alignment:
Q  187 tcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||| |||   || |||||||||  |||||||||||||||||||||||||    
T  38138623 tcttatcatgacaagtgattgtgctataagacgcaaataagctgtttatccaaacag 38138679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 39630109 - 39630141
Alignment:
Q  211 tataagctgcaaataagctgtttatccaaacag 243  Q
    |||| ||||||||||||||||||||||||||||    
T  39630109 tataggctgcaaataagctgtttatccaaacag 39630141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 46407429 - 46407485
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||  |||   |||||||||||||||||||||| ||||| ||||||    
T  46407429 cttatcatgataagtgcttacactataagctgcaaataagctgtctatcctaacagg 46407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 1058184 - 1058278
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| |||||||||| | |||||||  ||||||||  ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  1058184 tataaaaatagcttatgtaagcttatacataagcgcttatcatagtaagcgcttgtgctataagctgcaaataagctgtttattcaaacaggccc 1058278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 14956406 - 14956499
Alignment:
Q  154 ataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||| ||| |||| ||||| | |||||||  |||||||||||||||  || |||||||||||||||||||| |||||||||||||| ||||    
T  14956406 ataaaaatagcttatgcaagcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaataagttgtttatccaaacaagccc 14956499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 40981055 - 40980999
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40981055 cttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacagg 40980999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 29819026 - 29819089
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaact 252  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  29819026 ttatcatgataagcccttttgctataagctgcaaataagttgtttatccaaacagaccctaact 29819089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 2833465 - 2833520
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgc-aaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  2833465 cttatcatgataagcacttatgctataagctgcaaaataagcagtttatccaaaca 2833520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 2840294 - 2840239
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgc-aaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||    
T  2840294 cttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaaca 2840239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 2844981 - 2844926
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgc-aaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||    
T  2844981 cttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaaca 2844926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 4389873 - 4389822
Alignment:
Q  194 atgataagcacttctgctataagctgc-aaataagctgtttatccaaacagg 244  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  4389873 atgataagcacttctgctataagctgcaaaataagttatttatccaaacagg 4389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 35534774 - 35534813
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  35534774 tgctataagctgcaaataagctgtttttccaaacaggccc 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 41821517 - 41821425
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||| |||||| || | ||||| | |||||||  ||||||||||||||||||| |||  |||||||||||||||||||| |  |||||||||||    
T  41821517 tataataacagcgtacgcaagcttatacataagtgcttatcatgataagcacttgtgc--taagctgcaaataagctgttaagtcaaacaggccc 41821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 9130456 - 9130506
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    |||||||||| | ||||| |||||||||||||||||||||| |||||||||    
T  9130456 ttatcatgatgaccacttgtgctataagctgcaaataagctatttatccaa 9130506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 28763333 - 28763239
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||||||||  |||  | ||||||  |||||||||||||||   || ||||||||| | |||||||||||||||| |||||||||||    
T  28763333 tataaaaatagcctatgccagcatatacataaattcttatcatgataagtgtttatgctataagttacaaataagctgtttatacaaacaggccc 28763239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 36963491 - 36963545
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||||||||||| ||| |||||||||||||||||||  |||||| ||||||||    
T  36963491 ttatcatgataagcgcttgtgctataagctgcaaataaattgtttacccaaacag 36963545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 37353374 - 37353439
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaat-aagctgtttatccaaacag 243  Q
    |||||||  |||||||| ||||||| || ||||||||||||||||| ||| |||||||||||||||    
T  37353374 acataagcgcttatcatcataagcatttatgctataagctgcaaatcaagttgtttatccaaacag 37353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 11861726 - 11861686
Alignment:
Q  210 ctataagctgcaaataagctgtttatccaaacaggccccaa 250  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  11861726 ctataagctgcaaataagcagtttatccaaataggccccaa 11861686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 34236097 - 34236041
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||| |  || || ||||||||||||||||| ||||||||||||||||    
T  34236097 cttatcatgataaccgtttgtgttataagctgcaaataagttgtttatccaaacagg 34236041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 40637438 - 40637486
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  40637438 cttattatgataagcacttatgctataagctgcaaataagttttttatc 40637486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 5404551 - 5404500
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||||||||||| | || ||| ||||||||||| ||||||||||||    
T  5404551 ttatcatgataagcacttattctttaatctgcaaataagttgtttatccaaa 5404500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 9956931 - 9956998
Alignment:
Q  172 agctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    ||||||||||||||    ||||||||||||  ||| ||||||||||| |||||||| |||||||||||    
T  9956931 agctcaaacataagcgtgtatcatgataagtgcttgtgctataagctacaaataagttgtttatccaa 9956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 18133591 - 18133552
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  18133591 tgctgtaagctgcaaataagttgtttatccaaacaggccc 18133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 21119072 - 21119119
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  21119072 ttattatgataagcacttatgctataagctgcaaataagttttttatc 21119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 29169030 - 29169076
Alignment:
Q  197 ataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  29169030 ataagcgcttgtgctataagctgcagataagctctttatccaaacag 29169076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 29205718 - 29205676
Alignment:
Q  201 gcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  29205718 gcacttatgctataagctgcaaataatctgtttatcccaacag 29205676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 38602271 - 38602233
Alignment:
Q  211 tataagctgcaaataagctgtttatccaaacaggcccca 249  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  38602271 tataagctgcaaataagatgtttatccaaacagtcccca 38602233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 26215440 - 26215375
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  |||||||| |||||| ||  |||||||||||| ||||||| ||||||| ||||||||    
T  26215440 acataagcgcttatcattataagcgctcgtgctataagctgaaaataagttgtttatacaaacagg 26215375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 40859844 - 40859885
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgc 220  Q
    |||||||  ||||||||||||||||||| |||||||||||||    
T  40859844 acataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 10120692 - 10120648
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtt 232  Q
    |||||||||| || | ||| |||||||||||||||||||||||||    
T  10120692 cttatcatgagaaacgcttatgctataagctgcaaataagctgtt 10120648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 12976114 - 12976086
Alignment:
Q  215 agctgcaaataagctgtttatccaaacag 243  Q
    |||||||||||||||||||||||||||||    
T  12976114 agctgcaaataagctgtttatccaaacag 12976086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 15179074 - 15179034
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaataagctgt 231  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  15179074 atcatgatatgcacttgtgctataagttgcaaataagctgt 15179034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 5894289 - 5894359
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcccca 249  Q
    |||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  5894289 acataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaacaggaccca 5894359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 37473359 - 37473265
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| |||||||||| | |||||||  ||| |||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||    
T  37473359 tataaaaatagcttatgtaagcttatacataagtgcttgtcatgataagaacttgtgcaataagctgcaaataagttgtttatccaaacaggccc 37473265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 47498978 - 47499033
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  47498978 cttatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaacag 47499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 33541844 - 33541921
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaactcaac 256  Q
    |||||||  ||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||    
T  33541844 acataagcgcttatcatgataaacacttgtgctataaactgcaaataagttgtttatccaaactggccccaaatcaac 33541921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 41505647 - 41505554
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    |||||||| ||| |||||||||  |  ||||||  |||||||| ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  41505647 tataaaaatagcttatgtaagccaatgcataagcacttatcatcataagcgtttgtgctataagctgcaaataagctgtttatccaaacaggcc 41505554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 27820475 - 27820531
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  27820475 cttatcatgataagcgcttatgctataagctgcaaataagttgtttatccaaacagg 27820531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 24562452 - 24562503
Alignment:
Q  192 tcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  24562452 tcatgataagcacatgtgctataagctgcaaataagctgtttatccaaacag 24562503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 38247414 - 38247320
Alignment:
Q  152 ttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| |||||||| ||||| |||| | |||||||  | ||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||    
T  38247414 ttatgaaaacagcttatgtgagcttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaat-agctgtttatccaaacaggccc 38247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 33546597 - 33546663
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaactcaac 256  Q
    ||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||| || |||||    
T  33546597 tatcatgataaacacttgtgctttaagctgcgaataagctgtttatccaaacaggcccaaaatcaac 33546663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 51688630 - 51688576
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  51688630 cttatcatgataagcacttgtactataagctgcaaataagttgtttatccaaaca 51688576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 6556943 - 6556889
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||| |||||||| || |||| ||||||||||||||||||    
T  6556943 cttatcatgataagcacttgtgctataaactacaaagaagctgtttatccaaaca 6556889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 14331736 - 14331658
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||| |||| | |||||||  |||||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||    
T  14331736 tatgttagcttatacataagtgcttatcatgagaagcgcttgtgctataagcttcaaataagctgtttatctaaacagg 14331658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 41195340 - 41195398
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| ||||||| ||| |||||||||||||||||||| | |||||||||||||||||    
T  41195340 ttatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaacaggccc 41195398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 27146383 - 27146436
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||||||||||| | |||| |||||||||||||||||||||| |||||||||||    
T  27146383 cttatcatgatatgtacttatgctataagctgcaaataagctatttatccaaac 27146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30191916 - 30191863
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||||||| |||||||||||||||||||| || ||||||||| |||||||||||    
T  30191916 cttatcataataagcacttctgctataagttgtaaataagctatttatccaaac 30191863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 34795569 - 34795614
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccccaactc 253  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||    
T  34795569 tgctataagatgcaaataagctgtttatccaaacaggccctaactc 34795614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 1510454 - 1510510
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||||||    
T  1510454 cttatcaagataagcgcttgtgctataagatacaaataagctgtttatccaaacagg 1510510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 5741623 - 5741519
Alignment:
Q  152 ttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaac 251  Q
    ||||||||| ||| ||||||| || | |||||||  |||||||||||| |  ||| ||||||||||  |||||||| | ||||||||||||||||| ||     
T  5741623 ttataaaaatagcttatgtaaacttatacataagcgcttatcatgataggtgcttgtgctataagccacaaataagatatttatccaaacaggcccaaaa 5741524  T
Q  252 tcaac 256  Q
    |||||    
T  5741523 tcaac 5741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 14576798 - 14576857
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||  ||| |||||||||||| ||||||| ||||||||| |||||||||    
T  14576798 cttatcatgataagagcttgtgctataagctggaaataagatgtttatcccaacaggccc 14576857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 22344021 - 22343954
Alignment:
Q  180 cataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| |||||||||||||||| ||| |||  |||| |||||||||| || ||||||||||||||||    
T  22344021 cataagctcttatcatgataagcgcttgtgcggtaagttgcaaataagttgattatccaaacaggccc 22343954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 4920894 - 4920940
Alignment:
Q  197 ataagcacttctgctataagctgcaaa-taagctgtttatccaaaca 242  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||    
T  4920894 ataagcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 17603525 - 17603575
Alignment:
Q  197 ataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| ||| ||||||||||| ||||||||| ||||||||||||||||||    
T  17603525 ataagcgcttgtgctataagctacaaataagccgtttatccaaacaggccc 17603575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 30581737 - 30581683
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||| ||| |||| | ||||||||||||||||| |||||||||||||||    
T  30581737 cttatcatgaaaagtacttgttctataagctgcaaataaactgtttatccaaaca 30581683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 49938664 - 49938614
Alignment:
Q  197 ataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| ||| |||||||||||||| ||||||| |||||||||||||||||    
T  49938664 ataagcgcttgtgctataagctgcagataagctttttatccaaacaggccc 49938614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 473101 - 473036
Alignment:
Q  178 aacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||  |||| |||||||||| ||| || | ||||||||||||||| |||||||||||||||    
T  473101 aacataagcgcttaccatgataagcgcttttgttgtaagctgcaaataagttgtttatccaaacag 473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 8081825 - 8081769
Alignment:
Q  186 atcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||| |||||   |||||||||||| ||||| ||||||||||||||    
T  8081825 atcttatcatgataatcacttaatctataagctgcagataagttgtttatccaaaca 8081769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 24417817 - 24417869
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaa 240  Q
    |||||||||||||||||| || ||||||||||||| ||| |||||||||||||    
T  24417817 ttatcatgataagcacttgtgttataagctgcaaattaacctgtttatccaaa 24417869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 27970424 - 27970460
Alignment:
Q  204 cttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27970424 cttctgctataagctgcaaataagttgtttatccaaa 27970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 17727240 - 17727299
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| |||||||  ||| ||||||||||| || ||||| |||||||||||||||||||    
T  17727240 cttatcttgataagtgcttgtgctataagctacacataagttgtttatccaaacaggccc 17727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 34619506 - 34619553
Alignment:
Q  197 ataagcacttctgctataagctgcaaa-taagctgtttatccaaacag 243  Q
    ||||||| || |||||||||||||||| ||||||||||||||||||||    
T  34619506 ataagcaattatgctataagctgcaaattaagctgtttatccaaacag 34619553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 35058893 - 35058948
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacagg 244  Q
    ||||||||||||  ||| ||||||||| |||||| |||||||||||||||||||||    
T  35058893 tatcatgataagtgcttatgctataagttgcaaaataagctgtttatccaaacagg 35058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 43230894 - 43230948
Alignment:
Q  193 catgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||| ||||||| ||||||||||| |||| ||  |||||||||||||||||||    
T  43230894 catgatgagcacttgtgctataagctccaaacaatttgtttatccaaacaggccc 43230948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 45661260 - 45661302
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccccaa 250  Q
    |||| |||||||||||||| |||||||||| ||||||||||||    
T  45661260 tgctctaagctgcaaataatctgtttatcccaacaggccccaa 45661302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 51695631 - 51695681
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||| |||||  |||||||| |||||||||| |||||||||||||||||    
T  51695631 tatcataataagtgcttctgctgtaagctgcaattaagctgtttatccaaa 51695681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 9572246 - 9572299
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||| |||||| |||||||||||||||||||| | || || ||||||||    
T  9572246 atcatgataggcacttgtgctataagctgcaaataagttattcattcaaacagg 9572299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 27976405 - 27976372
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgca 221  Q
    ||||||||||||||||||| ||||||||||||||    
T  27976405 cttatcatgataagcacttgtgctataagctgca 27976372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 45975634 - 45975569
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  ||||||||||||||   || || |||||||| |||||||||| ||||||||||||||    
T  45975634 acataagggcttatcatgataagtgtttgtgttataagctacaaataagctatttatccaaacagg 45975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 5720942 - 5720838
Alignment:
Q  152 ttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaac 251  Q
    ||||||||| ||| || |||| || | |||||||  |||||||||||| |  ||| || |||||||  |||||||| | ||||||||||||||||| ||     
T  5720942 ttataaaaatagcttacgtaaacttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataagatatttatccaaacaggcccaaaa 5720843  T
Q  252 tcaac 256  Q
    |||||    
T  5720842 tcaac 5720838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 7069215 - 7069183
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||||| ||||||||||||||||||||    
T  7069215 tgctataagctggaaataagctgtttatccaaa 7069183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 8382653 - 8382621
Alignment:
Q  210 ctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||||||||||||||| |||||    
T  8382653 ctataagctgcaaataagctgtttatctaaaca 8382621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 10666014 - 10665960
Alignment:
Q  192 tcatgataagcacttctgctataagctgc---aaataagctgtttatccaaacag 243  Q
    |||||||||||| || |||||||||||||   ||||||| |||||||||||||||    
T  10666014 tcatgataagcatttgtgctataagctgctgtaaataagttgtttatccaaacag 10665960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 29904693 - 29904633
Alignment:
Q  180 cataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||| | |||||||||||||| |||   |||||||||||| ||||| ||||||||||||    
T  29904693 cataagcttttatcatgataagcgcttgaactataagctgcatataagttgtttatccaaa 29904633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 31517872 - 31517928
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacag 243  Q
    |||||||||||||   ||| |||||||||||||||| |||||| |||||||||||||    
T  31517872 cttatcatgataaatgcttatgctataagctgcaaattaagctatttatccaaacag 31517928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 33527275 - 33527323
Alignment:
Q  197 ataagcacttctgctataagctgcaaa-taagctgtttatccaaacagg 244  Q
    |||||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  33527275 ataagcgcttatgctctaagctgcaaaataagctgtttatccaaacagg 33527323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 45855766 - 45855730
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||||||||| || |||||||||||||    
T  45855766 tgctataagctgcaaataagttggttatccaaacagg 45855730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 48064241 - 48064189
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaaca 242  Q
    |||||||||||  ||| |||||||||||||||| |||| ||||||||||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 51190762 - 51190726
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  51190762 tgctataagctacaaataagttgtttatccaaacagg 51190726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 30956771 - 30956825
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30956771 cttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 30972583 - 30972637
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30972583 cttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 31365395 - 31365473
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||| ||||| | |||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  31365395 tatgcaagcttatacataagtgcttatcatgataatcacttgtgctataagctgcaaataagctgtttatccacacagg 31365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 35959566 - 35959660
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| ||| ||| ||||| |||| | ||||||| |||||||||||||||  ||| || |||||||||||||||||||||||||||||||| ||||    
T  35959566 tatagaaatagcttatgtgagcttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaacaagccc 35959660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 46886835 - 46886888
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  46886835 atcatgataagcacttatgctataagctgcaaataagttgtttatccaaacagg 46886888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 1508704 - 1508779
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||| ||||| | |||||||  ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  1508704 tatgcaagcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaataagctgtttttccaaac 1508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 20880437 - 20880343
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| |||||||||| | |||||||  ||||| ||||||| | ||| |||||||| ||||||||||| ||| |||||||||||||||    
T  20880437 tataaaaatagcttatgtaagcttatacataagcacttattatgataaccgcttgtgctataaactgcaaataagttgtctatccaaacaggccc 20880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 42800058 - 42800117
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  42800058 cttaacatgataagcgcttctgctataagctacaaataagctgttaatccaaacatgccc 42800117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 944419 - 944358
Alignment:
Q  188 cttatcatgataagcacttc-tgctataagctgcaaataagctgtttatccaaacaggcccc 248  Q
    |||||||||||||||||||  || ||||||||||||||||| ||||||||||||||| ||||    
T  944419 cttatcatgataagcacttagtgttataagctgcaaataagttgtttatccaaacagacccc 944358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 39442373 - 39442321
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||    
T  39442373 cttatcataataagcacttaagccataagctgcaaataagctgtttatccaaa 39442321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 402667 - 402730
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  ||||||||||||||||||| |||||| ||||||||||||| ||||| | ||||||    
T  402667 acataagcccttatcatgataagcacttgtgctatgagctgcaaataagttgtttgttcaaaca 402730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 34034096 - 34034037
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||| | | | |||||||||| ||||||| |||||||||||||||||||    
T  34034096 cttatcatgataagcgcctgttctataagctgaaaataagttgtttatccaaacaggccc 34034037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 34235202 - 34235265
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  ||||||||||||||||| | | ||||||||| |||||||| ||||||||||||||    
T  34235202 acataagtgcttatcatgataagcacatgtactataagctacaaataagttgtttatccaaaca 34235265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 2719394 - 2719341
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||||||||||||||  || |||||||||||| ||||||||||||||| |||||    
T  2719394 cttatcatgataagcgtttgtgctataagctgtaaataagctgtttattcaaac 2719341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 20003430 - 20003483
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||||||  ||||||||||| |||||||| ||||| ||||||||    
T  20003430 ttatcatgataagcactcgtgctataagctacaaataagttgtttctccaaaca 20003483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 24684968 - 24685033
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaactc 253  Q
    ||||||||||| || | || ||||||||||||||||||| | || ||||||||||||||| |||||    
T  24684968 cttatcatgatgagaatttgtgctataagctgcaaataaaccgtctatccaaacaggccctaactc 24685033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 849587 - 849551
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  849587 tgctataagctgcaaataagttgtttatccaaacagg 849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 3846046 - 3846082
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3846046 tgctataagctacaaataagctgtttatccaaacagg 3846082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 10704713 - 10704745
Alignment:
Q  213 taagctgcaaataagctgtttatccaaacaggc 245  Q
    |||||||||||||||||||||||||||||||||    
T  10704713 taagctgcaaataagctgtttatccaaacaggc 10704745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 23815997 - 23815941
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttat 235  Q
    |||||||  |||||||||||||||||||  |||||||| ||||||||||| ||||||    
T  23815997 acataagtgcttatcatgataagcactttggctataagatgcaaataagcagtttat 23815941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 28240261 - 28240213
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  28240261 cttatcatgataagcgcttgtgctataagctgcagataagttgtttatc 28240213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 31403293 - 31403237
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||| |||||||||||||  |||| || |||||||||| |||||||||||||||||    
T  31403293 cttatgatgataagcacttgggctagaaactgcaaataacctgtttatccaaacagg 31403237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 38902001 - 38901965
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||| |||||||||||||||||||||||||||    
T  38902001 tgctataagttgcaaataagctgtttatccaaacagg 38901965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 42747916 - 42747952
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||| |||||||||||||||||||||||||||    
T  42747916 tgctataagttgcaaataagctgtttatccaaacagg 42747952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 47132302 - 47132246
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||  ||| ||||||||| || ||||||| ||||||||||||||||    
T  47132302 cttatcatgataagtgcttgtgctataaggtgaaaataagttgtttatccaaacagg 47132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 34610942 - 34610993
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||||||| ||| || ||||||||||| ||||| ||||||||||||    
T  34610942 ttatcatgataagcgcttgtgttataagctgcagataagttgtttatccaaa 34610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 35328289 - 35328351
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  |||||||| |||||| ||| | |||||||||||||||||||| ||||||||||||    
T  35328289 acataagtgcttatcataataagcgcttgt-ctataagctgcaaataagctatttatccaaaca 35328351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 53789571 - 53789662
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||| ||| ||| |||||||||| | |||||||  ||||||||||||||| ||| ||  ||||||||||| ||||  ||||| |||||||||    
T  53789571 tatagaaatagcttatgtaagcttacacataagtgcttatcatgataagcgcttgtggcataagctgcaattaagtcgtttacccaaacagg 53789662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 18405985 - 18406018
Alignment:
Q  210 ctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||| ||||||||||||||||||||||||||    
T  18405985 ctataagttgcaaataagctgtttatccaaacag 18406018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 30443711 - 30443658
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctg 219  Q
    ||||||||||||  |||||   ||||||||||||||||||| ||||||||||||    
T  30443711 tatgtaagctcatgcataattgcttatcatgataagcacttgtgctataagctg 30443658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 47249604 - 47249653
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatcca 238  Q
    |||||||||||||  ||| || ||||||||||||||||||| ||||||||    
T  47249604 ttatcatgataagtgcttgtgttataagctgcaaataagctatttatcca 47249653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 5435767 - 5435731
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaat 224  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  5435767 cttatcatgataagcacttatgctataagctgtaaat 5435731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 12833919 - 12833871
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||| ||||||||||||| |||||||||||||| ||||| | ||||||    
T  12833919 cttattatgataagcacttatgctataagctgcatataagttttttatc 12833871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 20170457 - 20170389
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||  |||||||||| ||||| || || ||||| ||||||||||| ||||| ||| |||||||||    
T  20170457 acataagcgcttatcatgaaaagcagttgtgatataaactgcaaataagttgtttctcccaacaggccc 20170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 27896317 - 27896373
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacag 243  Q
    ||||||||| |||||| || | |||||||||||||| ||||||||||||| ||||||    
T  27896317 cttatcatggtaagcatttatactataagctgcaaattaagctgtttatcaaaacag 27896373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 35127497 - 35127557
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaat-aagctgtttatcca 238  Q
    |||||||  ||||||||||||||  ||| || |||||||||||||| ||||||||||||||    
T  35127497 acataagcacttatcatgataagagcttatggtataagctgcaaatgaagctgtttatcca 35127557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 39602337 - 39602377
Alignment:
Q  212 ataagctgcaaataagctgtttatccaaacaggccccaact 252  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  39602337 ataagctgcaaataagttgtttatccaatcaggccctaact 39602377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 3735601 - 3735698
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccccaa 250  Q
    |||| ||| ||| |||||||||| |  ||||||  ||||||||||||| | ||| |||||||||||||||||| | ||||||||||||||||||||||    
T  3735601 tatagaaatagcttatgtaagcttatccataagcgcttatcatgataatctcttgtgctataagctgcaaataggttgtttatccaaacaggccccaa 3735698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 9202883 - 9202939
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  9202883 cttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacagg 9202939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 19460512 - 19460572
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    |||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  19460512 acataagtgcttatcatgataagcatttgtgctataagctgcaaataagctgtttatccaa 19460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 24030547 - 24030601
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  24030547 cttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 7706126 - 7706183
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  7706126 tatcatgataagcacttgtgctataacctgcaaataagttgtttatacaaacaggccc 7706183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 32372558 - 32372490
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||  ||||||||||||||  ||| |||||||||||||||||||| |||||||||||||| ||||    
T  32372558 acataagggcttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaacatgccc 32372490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 7319134 - 7319209
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||||||||| |  ||||||  ||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||    
T  7319134 tatgtaagcttatgcataagtgcttatcatgataagcgcttgtgctataagctgtaaataagctgtttattcaaac 7319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 39477884 - 39477827
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||| ||| | ||||||||||||||||||||| |||||| |||||||||    
T  39477884 tatcatgataagcgcttgtcctataagctgcaaataagctgcttatcccaacaggccc 39477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 28776919 - 28776855
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||||  ||||||||||||||  |||  ||||||||||||||||||| |||||||||||||||    
T  28776919 acataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaacag 28776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 39105408 - 39105360
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataag 227  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  39105408 acataagcgcttatcatgataagcacttatgctataagctgcaaataag 39105360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 16938003 - 16938070
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    |||||||  ||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||||||    
T  16938003 acataagtgcttatcatgataaacacttgtgttataagcttcaaataagttgtttgtccaaacaggcc 16938070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 25461900 - 25461959
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||| ||| || |||||||| ||||||| ||| ||||||||||||||||    
T  25461900 cttatcatgataagcgcttgtgttataagctacaaataacctgcttatccaaacaggccc 25461959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 32941421 - 32941339
Alignment:
Q  162 agcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggc 245  Q
    |||||||| ||||| | || ||||  ||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||||||||    
T  32941421 agcctatgcaagcttatacgtaagcgcttatcatggtaagtgctt-tgctataagctgctaataagctgtttatccaaacaggc 32941339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 40426687 - 40426632
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||||  ||| ||||||||||||||||| || |||||||||||||||    
T  40426687 cttatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaacag 40426632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 42573905 - 42573972
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacaggc 245  Q
    |||||||  ||||||||||||||| ||   ||||||||||||||| ||||||||||||||||||||||    
T  42573905 acataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatccaaacaggc 42573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 25461024 - 25460958
Alignment:
Q  181 ataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||| |||||||||||||||  ||| |||||||||||  | |||||||||||||||||||| ||||    
T  25461024 ataagctcttatcatgataagtgcttatgctataagctaaatataagctgtttatccaaacatgccc 25460958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 1465145 - 1465206
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||  |||||| |||||||||||| |||||||| |||| ||||| |||||||||||||    
T  1465145 acataagcgcttatcttgataagcacttatgctataaactgcgaataatctgtttatccaaa 1465206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 36145237 - 36145200
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggc 245  Q
    |||||||||||||||||||||||||||| |||||||||    
T  36145237 tgctataagctgcaaataagctgtttatacaaacaggc 36145200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 37954617 - 37954580
Alignment:
Q  209 gctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37954617 gctataagctgcaaataagctatttatccaaacaggcc 37954580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 42500374 - 42500415
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggcccca 249  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  42500374 tgctataagctggaaataagctgtttatccaaacagacccca 42500415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 24029993 - 24029937
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||| ||||||| || || ||||||||  ||||||||||||||||||||||||    
T  24029993 cttatcataataagcatttttgttataagctctaaataagctgtttatccaaacagg 24029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 39248044 - 39247984
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataa-gctgcaaataagctgtttatcca 238  Q
    |||||||  |||||||| ||||||| || |||||||| |||||||||||||||||||||||    
T  39248044 acataagcgcttatcatcataagcaattatgctataaagctgcaaataagctgtttatcca 39247984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 3569097 - 3569132
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaataa 226  Q
    |||||||||||||||| |||||||||||||||||||    
T  3569097 atcatgataagcacttgtgctataagctgcaaataa 3569132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 10639887 - 10639825
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  |||||| |||||| ||||| |||| |||| |||||||||||||||||||||||||    
T  10639887 acataagtgcttatcgtgataaccacttttgct-taagttgcaaataagctgtttatccaaaca 10639825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 10772014 - 10772049
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaat 224  Q
    |||||||||||||||||| |||||||||||||||||    
T  10772014 ttatcatgataagcacttatgctataagctgcaaat 10772049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 13697904 - 13697959
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||||||||||   ||| || ||||||||||||||||| |||||||||||||||    
T  13697904 cttatcatgataaatgcttatgttataagctgcaaataagttgtttatccaaacag 13697959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 31051822 - 31051767
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||||||| ||||||||||||| |||||   |||||| ||||||||    
T  31051822 ttatcatgataagcacttgtgctataagctgcgaataaatggtttattcaaacagg 31051767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 12554388 - 12554334
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||| ||||||  || |||| ||||||||||||||| ||||||||||||||    
T  12554388 cttatcataataagcgtttgtgctttaagctgcaaataagttgtttatccaaaca 12554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 32703573 - 32703639
Alignment:
Q  178 aacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||  |||||||||||||   ||| |||||||||||||||||||| ||||| || |||||||    
T  32703573 aacataagcgcttatcatgataaatgcttgtgctataagctgcaaataagttgtttttctaaacagg 32703639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 3520355 - 3520302
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||| |||  ||| |||||||||||| ||||||| ||||||||||||||    
T  3520355 ttatcatgacaagtgcttgtgctataagctgaaaataagttgtttatccaaaca 3520302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 7984929 - 7984868
Alignment:
Q  172 agctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgttt 233  Q
    |||| |||||||||  ||||||||||||||| | | | |||||||||||||||||| |||||    
T  7984929 agcttaaacataagcgcttatcatgataagcgcatgtactataagctgcaaataagttgttt 7984868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 12433521 - 12433570
Alignment:
Q  194 atgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||| | ||| || ||||||||||||||||| |||||||||||||||    
T  12433521 atgataaacgcttgtgttataagctgcaaataagttgtttatccaaacag 12433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 40439102 - 40439153
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||| ||||||| ||| || |||||| |||||||||||||||||||||||||    
T  40439102 tatcaagataagcgcttgtg-tataaggtgcaaataagctgtttatccaaaca 40439153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 40452233 - 40452189
Alignment:
Q  197 ataagcacttctgctataagctgcaaataagctgtttatccaaac 241  Q
    |||||| ||| |||| ||||||||||||||||||||||| |||||    
T  40452233 ataagcccttttgctgtaagctgcaaataagctgtttattcaaac 40452189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 42583493 - 42583529
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  42583493 tgctataagcttcaaagaagctgtttatccaaacagg 42583529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 42646580 - 42646548
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgc 220  Q
    ||||||||||||||||||| |||||||||||||    
T  42646580 cttatcatgataagcacttgtgctataagctgc 42646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 264306 - 264250
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  264306 cttatcatgataagcacttgtgctataagctgcaaattagctgttaatccaaacagg 264250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 6538464 - 6538383
Alignment:
Q  166 tatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||| ||||| | |||||||  |||||||| |||||  ||| |||||||||||||||||||||| |||||||||||||||||    
T  6538464 tatgcaagcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagctatttatccaaacaggccc 6538383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 34430639 - 34430582
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||    
T  34430639 tatcatgataagcacttgtgctataagctgcaaataagatgtttatcgaaacatgccc 34430582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 24626255 - 24626164
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||| ||| ||| |||||||||| | |||||||   | ||||||||||||| || |||||||||||| ||||||| ||||||||||||||||    
T  24626255 tatagaaatagcttatgtaagcttatacataagcaatcatcatgataagcatttgtgctataagctgtaaataagttgtttatccaaacagg 24626164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 35069487 - 35069431
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||| | ||| |||||||||||||||||||| |||||||| |||||||    
T  35069487 cttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacagg 35069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 9632835 - 9632785
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaa 239  Q
    |||| |||||||||| || |||||||||||||||||||| |||||||||||    
T  9632835 ttattatgataagcatttgtgctataagctgcaaataagttgtttatccaa 9632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10645470 - 10645516
Alignment:
Q  194 atgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    |||||||||| || |||||||||||||||||||| ||||||||||||    
T  10645470 atgataagcatttgtgctataagctgcaaataagttgtttatccaaa 10645516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 14929653 - 14929604
Alignment:
Q  194 atgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||| ||||||||||||||||| || ||||| |||||||||    
T  14929653 atgataagcacttgtgctataagctgcaaatgagttgtttgtccaaacag 14929604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 8365113 - 8365157
Alignment:
Q  192 tcatgataagcacttctgctataagctgcaaataagctgtttatc 236  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  8365113 tcatgataagcgcttatgctataagctgcgaataagctgtttatc 8365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 13907523 - 13907491
Alignment:
Q  210 ctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||||||||||||||||||||||    
T  13907523 ctataagctgcaaataagctgtttatccaaaca 13907491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 31623481 - 31623446
Alignment:
Q  212 ataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||||||||||| |||||||||||||||    
T  31623481 ataagctgcaaataagctgtctatccaaacaggccc 31623446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 32014152 - 32014097
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||| ||||||||||||| | ||||||||||||||||||   |||||||||||||    
T  32014152 cttataatgataagcactttttctataagctgcaaataagtaatttatccaaacag 32014097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 9604775 - 9604741
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||| ||||||||||||||||||||||||||    
T  9604775 tgctataaactgcaaataagctgtttatccaaaca 9604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 18076156 - 18076083
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataa 226  Q
    |||||||| | | |||| ||||| | |||||||  ||||| ||||||||| ||| |||||||||||||||||||    
T  18076156 tataaaaataacttatgcaagcttatacataagtgcttattatgataagcgcttgtgctataagctgcaaataa 18076083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 658580 - 658636
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||||| |||| ||||||||| || ||||||   |||||||||||||||    
T  658580 cttatcatgataagtacttgtgctataagttgaaaataaatagtttatccaaacagg 658636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 23063663 - 23063719
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||||| || || ||||||||| |||||||||| || | |||||||||||    
T  23063663 cttatcatgataatcatttgtgctataagatgcaaataagttgataatccaaacagg 23063719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 30926463 - 30926406
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||| ||| ||||||||||||| |  ||| |||||||| ||||||||||    
T  30926463 cttatcatgataagcccttgtgctataagctgcca--aagttgtttatctaaacaggccc 30926406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 158067 - 157973
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| |||||||||| |  ||||||   ||||||| |||||   || ||||||||||||||||||||||||||||||||||||||||    
T  158067 tataaaaatagcttatgtaagctaatgcataagcaattatcatcataagtgtttgtgctataagctgcaaataagctgtttatccaaacaggccc 157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 17204098 - 17204008
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    |||||||||||| |||||||||| | |||||||   ||||| |||||||  ||| | |||||||||||||||||| |||||||||||||||    
T  17204098 tataaaaacagcttatgtaagctaacacataagcggttatcgtgataagtgcttgttctataagctgcaaataagttgtttatccaaacag 17204008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 27028 - 27083
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||    
T  27028 cttatcatgataagcgcttgtgctataagctgcaaacaagatgtttatccaaacag 27083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 18815052 - 18814960
Alignment:
Q  152 ttataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggc 245  Q
    ||||||||||||| |||||||||| |  || |||  ||||| ||||||||||||| ||| ||||||||||||||| |  |||||||||||||||    
T  18815052 ttataaaaacagcttatgtaagcttatgcaaaagtgcttat-atgataagcacttgtgccataagctgcaaataaaccatttatccaaacaggc 18814960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 24169220 - 24169127
Alignment:
Q  154 ataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||| ||| |||||||||||| |||||||  || |||||||||||  ||  || |||||||||||| |||||||||| | |||||||||||    
T  24169220 ataaaaatagcttatgtaagctcatacataagcgctaatcatgataagtgctggtgatataagctgcaagtaagctgtttctgcaaacaggccc 24169127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 45935365 - 45935417
Alignment:
Q  195 tgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  45935365 tgataagcgcttgagctataagctgcaaataagttgtttatccaaacaggccc 45935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 50662870 - 50662926
Alignment:
Q  191 atcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||||||| ||| || ||||||||||||||||| |||||||||||||| ||||    
T  50662870 atcatgataagctcttgtgatataagctgcaaataagttgtttatccaaacatgccc 50662926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 11389470 - 11389407
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  ||||||||||||||||||  || ||||| ||||||||||| ||||||||||||||    
T  11389470 acataagcacttatcatgataagcactcatgatataaactgcaaataagttgtttatccaaaca 11389407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 35571763 - 35571818
Alignment:
Q  189 ttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||| ||||||||||| ||||||| | ||||||||| ||||||||||||||||    
T  35571763 ttatcatcataagcacttccgctataaacggcaaataaggtgtttatccaaacagg 35571818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 39603596 - 39603635
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  39603596 tgctataagctgcaaataagctgtttatccaaataggccc 39603635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 44797818 - 44797759
Alignment:
Q  187 tcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    ||||| |||||||| | ||| ||||||||| |||||||||| ||||||||||||||||||    
T  44797818 tcttaccatgataatcgcttgtgctataagttgcaaataagttgtttatccaaacaggcc 44797759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 44863097 - 44863151
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||| |||  ||| |||||||||||||||||||| ||||||||||||||    
T  44863097 cttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 50681199 - 50681293
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| | |||||||| | ||||||   ||||||||||||||  ||| |||||||||||  ||||||| |||||||||||||| ||||    
T  50681199 tataaaaatagcttttgtaagcttatacataaacgcttatcatgataagttcttgtgctataagctataaataagttgtttatccaaacaagccc 50681293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 35571958 - 35572022
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||  ||| ||||||||| ||||| |||||||||||||||||||| |||||||||| |||||    
T  35571958 acataagtgcttgtcatgataaccacttgtgctataagctgcaaataag-tgtttatccatacagg 35572022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 3155538 - 3155486
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    ||||||||||||||| ||| | |||||||||||| ||||| ||||||||||||    
T  3155538 cttatcatgataagcgcttgtactataagctgcagataagttgtttatccaaa 3155486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 47771925 - 47771869
Alignment:
Q  194 atgataagcacttctgctataagctgcaaa-taagctgtttatccaaacaggcccca 249  Q
    ||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| ||||    
T  47771925 atgataagcgcttatgctataagctccaaaataagctgtttatccaaacagggccca 47771869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 25904359 - 25904414
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacag 243  Q
    ||||||||||||||  ||| |||||||| |||||||| || |||||||||||||||    
T  25904359 cttatcatgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 25904414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 43505916 - 43505824
Alignment:
Q  153 tataaaaacagcctatgtaagctcaaacataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 247  Q
    |||||||| ||| |||| ||||| | |||||||  |||||||||||  ||  || ||||||||| |||||||||| |||||||||||||| ||||    
T  43505916 tataaaaatagcttatgcaagcttatacataagtgcttatcatgat--gcgtttgtgctataagttgcaaataagttgtttatccaaacatgccc 43505824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 2243982 - 2243944
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacaggcc 246  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  2243982 tgctataagctgtaaataatctgtttatccaaacaggcc 2243944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 26520355 - 26520421
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacagg 244  Q
    |||||||  ||||||||||||| ||||| ||||| |||| ||||| |||| ||||||||||||||||    
T  26520355 acataagtgcttatcatgataaacacttatgctagaagcagcaaattaagttgtttatccaaacagg 26520421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 44138492 - 44138442
Alignment:
Q  190 tatcatgataagcacttctgctataagctgcaaataagctgtttatccaaa 240  Q
    ||||||||||||  ||| | ||| |||||||||||||||||||||||||||    
T  44138492 tatcatgataagtgcttgtactaaaagctgcaaataagctgtttatccaaa 44138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 17823068 - 17823019
Alignment:
Q  194 atgataagcacttctgctataagctgcaaat-aagctgtttatccaaaca 242  Q
    ||||||||| ||| |||||| |||||||||| ||||||||||||||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaaca 17823019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 53294235 - 53294293
Alignment:
Q  188 cttatcatgataagcacttctgctataagctgcaaataagc-tgtttatccaaacaggccc 247  Q
    ||||||||||||||| ||| |||  |||||||||||||||| |||||||||||||| ||||    
T  53294235 cttatcatgataagcgcttgtgc--taagctgcaaataagcttgtttatccaaacatgccc 53294293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 4212847 - 4212811
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  4212847 tgctataagctgaaaataagttgtttatccaaacagg 4212811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 27330190 - 27330226
Alignment:
Q  208 tgctataagctgcaaataagctgtttatccaaacagg 244  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  27330190 tgctataagctacaaataagttgtttatccaaacagg 27330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 47119086 - 47119134
Alignment:
Q  194 atgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    ||||||||  ||| ||||||||| |||||||||| ||||||||||||||    
T  47119086 atgataagtgcttgtgctataagttgcaaataagttgtttatccaaaca 47119134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 49202559 - 49202527
Alignment:
Q  210 ctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||||||||||||| ||||||||||||||    
T  49202559 ctataagctgcaaataagttgtttatccaaaca 49202527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 58538 - 58475
Alignment:
Q  179 acataagatcttatcatgataagcacttctgctataagctgcaaataagctgtttatccaaaca 242  Q
    |||||||  ||||| |||| |||||||| |||| ||||||||||||||| ||||||||||||||    
T  58538 acataagtgcttattatgacaagcacttgtgctctaagctgcaaataagttgtttatccaaaca 58475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University