View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4904_low_3 (Length: 308)
Name: NF4904_low_3
Description: NF4904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4904_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 42089310 - 42089033
Alignment:
| Q |
13 |
aatataattatttcttgttccctttcatgtatctttacattaacgaaataaccaaatcatgataatcactaaattaaatttgaatgccctgaaaacatga |
112 |
Q |
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| T |
42089310 |
aatataatgatttcttgttccctttcatgtatctttacattaacgaaataaccaaatcatgataatcactaaattaaatttgaatgccctgaaaacatga |
42089211 |
T |
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| Q |
113 |
aaatgcatatagtactatttactttctgtacaatatctcatgcaatagatagtggtatgtatcatactacacaaaagtactatggtcaattctggtccct |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
42089210 |
aaatgcatatagtactatttactttctgtataatatctcatgca----atagtggtatgcatcatactacacaaaagtactatggtcaattctggt-cct |
42089116 |
T |
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| Q |
213 |
ggtaattcattaatatcgatcaatatgcagacaatgatggagatcaaaaagagaaagttaacagaacaaaaaatatattaatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42089115 |
ggtaattcattaatatcgatcaatatgcagacaataatggagatcaaaaagagaaagttaacagaacaaaaaatatattaatt |
42089033 |
T |
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