View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4905-Insertion-2 (Length: 296)

Name: NF4905-Insertion-2
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4905-Insertion-2
NF4905-Insertion-2
[»] chr2 (1 HSPs)
chr2 (8-296)||(4544251-4544539)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 4544539 - 4544251
Alignment:
Q  8 gtttcctccatggtttcaggaccgccagaccattcaacctgtaatttggtttgtatagtgtccaggacaagattaacaaaggtaacatatctnnnnnnnt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  4544539 gtttcctccatggtttcaggaccgccagaccattcaacctgtaatttggtttgtatagtgtccaggacaagattaacaaaggtaacatatctaaaaaaat 4544440  T
Q  108 aatttgatccagtggttggtcaatgaaaacagtgaaagtaccgatttattattcagtattctagtacatcaataactgaatttttatagtaataaactac 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4544439 aatttgatccagtggttggtcattgaaaacagtgaaagtaccgatttattattcagtattctagtacatcagtaactgaatttttatagtaataaactac 4544340  T
Q  208 ttgtctgttatttacttcccttttctagttcatagtgactgcaatgccctcacaaagtagcaagattcactcacttcacccctctttta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4544339 ttgtctgttatttacttcccttttctagttcatagtgactgcaatgccctcacaaagtagcaagattcactcacttcacccctctttta 4544251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University