View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905-Insertion-5 (Length: 296)
Name: NF4905-Insertion-5
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 79 - 296
Target Start/End: Complemental strand, 378598 - 378381
Alignment:
| Q |
79 |
gtgttaagaaggaattccagtttgcacataaacgccaatcgaaggttatgtgaaaggggaaaaaatggaaactagggttttcaattgaatgtgaatcaat |
178 |
Q |
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| T |
378598 |
gtgttaagaaggaattccaatttgcacataaacgccaatcgaaggttttgtgaaaggggaaaaaatggaaactagggttttcaattgaatgcgaatcaat |
378499 |
T |
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| Q |
179 |
ctcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaagaaatggtggttgggtgtcatattctgttacaata |
278 |
Q |
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| T |
378498 |
ctcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaagaaatggtggttgtgtgtcatattctgttacaata |
378399 |
T |
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| Q |
279 |
cactaaaaacagaggcac |
296 |
Q |
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|||||||||||||||||| |
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| T |
378398 |
cactaaaaacagaggcac |
378381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 378768 - 378689
Alignment:
| Q |
8 |
ttctcgacaagttttattattactattttatttaat---attagtaacataacaataaaaagtcaagtcctcttgtgtta |
84 |
Q |
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| T |
378768 |
ttctcgacaagttttattattactattttatttaatattattagtaacataacattaaaaagccaagtcctcttgtgtta |
378689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 50838956 - 50838849
Alignment:
| Q |
180 |
tcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaagaaatggtggttgggtgtcatattctgttacaatac |
279 |
Q |
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| T |
50838956 |
tcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaagaaatggtggttgtgtgtcatattctgttacaatac |
50838857 |
T |
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| Q |
280 |
actaaaaa |
287 |
Q |
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|||||||| |
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| T |
50838856 |
actaaaaa |
50838849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 50836896 - 50837004
Alignment:
| Q |
180 |
tcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaag-aaatggtggttgggtgtcatattctgttacaata |
278 |
Q |
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| T |
50836896 |
tcttcatagtccagttgaaagatgaaattttgtggttcaattcaatgataaaatttgctaagaagaaaatggtggttgtgtgtcatattctgttacaata |
50836995 |
T |
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| Q |
279 |
cactaaaaa |
287 |
Q |
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||||||||| |
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| T |
50836996 |
cactaaaaa |
50837004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 50836741 - 50836843
Alignment:
| Q |
79 |
gtgttaagaaggaattccagtttgcacataaacgccaatcgaaggttatgtgaaaggggaaaaaatggaaactagggttttcaattgaatgtgaatcaat |
178 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50836741 |
gtgtaaagaaggaattccagtttgcacataaacgccaatcgaaggttttgtgaaaggggaaaaaatggaaactagggttttcaattgaatgcgaatcaat |
50836840 |
T |
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| Q |
179 |
ctc |
181 |
Q |
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||| |
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| T |
50836841 |
ctc |
50836843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 50839111 - 50839009
Alignment:
| Q |
79 |
gtgttaagaaggaattccagtttgcacataaacgccaatcgaaggttatgtgaaaggggaaaaaatggaaactagggttttcaattgaatgtgaatcaat |
178 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50839111 |
gtgtaaagaaggaattccagtttgcacataaacgccaatcgaaggttttgtgaaaggggaaaaaatggaaactagggttttcaattgaatgcgaatcaat |
50839012 |
T |
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| Q |
179 |
ctc |
181 |
Q |
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||| |
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| T |
50839011 |
ctc |
50839009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 50836599 - 50836642
Alignment:
| Q |
41 |
aatattagtaacataacaataaaaagtcaagtcctcttgtgtta |
84 |
Q |
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| T |
50836599 |
aatattagtaacataacattaaaaagccaagtcctcttgtgtta |
50836642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 50839253 - 50839210
Alignment:
| Q |
41 |
aatattagtaacataacaataaaaagtcaagtcctcttgtgtta |
84 |
Q |
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| T |
50839253 |
aatattagtaacataacattaaaaagccaagtcctcttgtgtta |
50839210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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