View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_high_12 (Length: 289)
Name: NF4905_high_12
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 2796526 - 2796679
Alignment:
| Q |
128 |
ttaaatataagacagacgagtgctggtgaaagctatatttcttattgaataagcctgttgaaaatttcaatcgggccaaaatggcataaaataaagcatt |
227 |
Q |
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| T |
2796526 |
ttaaatataagacagacgagtgctggtgaaagctatatttcttattgaataagcttgttgaaaatttcaatcgggccaaaatggcataaaataaagcatt |
2796625 |
T |
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| Q |
228 |
ggataaaaagaaaacatacatgatcacattcatctgtcaaattacagaataata |
281 |
Q |
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| T |
2796626 |
ggataaaaagaaaacatacatgatcacattcatctgtcaaattacagaataata |
2796679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 2796047 - 2796178
Alignment:
| Q |
5 |
ttcaggaatttcattcgaacatgttagacttggtaaggtgtctccctcaacgaaccctaatattaaagcgggcactaatcacacaaataactactgtttt |
104 |
Q |
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| T |
2796047 |
ttcaggaatttcatttcaacatgttagactcggtaaggtgtctccctcaacgaactctaatattaaagcgggctctaatcacacaaataactactgtttt |
2796146 |
T |
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| Q |
105 |
gtctaagattataaaaacaataattaaatata |
136 |
Q |
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| T |
2796147 |
gtctaagattataaaaacaataattaaatata |
2796178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 2789485 - 2789562
Alignment:
| Q |
82 |
atcacacaaataactactgttttgtctaagattataaaaacaataa-----ttaaatataagacagacgagtgctggt |
154 |
Q |
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| T |
2789485 |
atcacacaaataactacggttttgtgtaagattataaaaacaataaaaaaataaaatataagacagatgagtactggt |
2789562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 5412090 - 5412172
Alignment:
| Q |
117 |
aaaaacaataattaaat-ataagacagacgagtgctggtgaaagctatatttcttattgaataagcctgttgaaaatttcaat |
198 |
Q |
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| T |
5412090 |
aaaaacaataatttaattacaagacagatgagtactggtcaaagctgtatttcttaataatcaagcctgttgaaagtttcaat |
5412172 |
T |
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