View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_high_13 (Length: 286)
Name: NF4905_high_13
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 32193677 - 32193410
Alignment:
| Q |
1 |
aacagaaatttctacacagattatccacacccacattcttaatcctcactccatttatacctatagcaataaaaacctttgagttttgtactaggaatct |
100 |
Q |
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| T |
32193677 |
aacagaaatttctacacaaattatccacacccacattcttaatcctcactccatttatacctatagcaataaaaacctttgagctttgtactaggaatcc |
32193578 |
T |
|
| Q |
101 |
gatgcttcgtcccctttctcactttatgtaattgcagctcatgcctaacagattgtggctcctgcattaccagttctgatccttctagaatgccttgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32193577 |
gatgcttcgtcccctttctcactttatgtaattgcagctcatgcctaacagattgtggctcctgcattaccagttctgatctttctagaatgccttgatg |
32193478 |
T |
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| Q |
201 |
tccaactccctctagaagtccttgttgtgcttctgtttgacatggcatattccttacagaagccttta |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32193477 |
tccaactccctctagaagtccttgttgtgcttctgtttgacgtggcatattccttacagaagccttta |
32193410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 8807187 - 8807312
Alignment:
| Q |
142 |
tgcctaacagattgtggctcctgcattaccagttctgatccttctagaatgccttgatgtccaactccctctagaagtccttgttgtgcttctgtttgac |
241 |
Q |
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||||||||||||||||| | ||||| |||| | |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||||| |||| |
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| T |
8807187 |
tgcctaacagattgtggattttgcataaccaaatatgatccttctagaaggccttgctgtccaactccctctacaaagtcttgttgtccttctgtatgac |
8807286 |
T |
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| Q |
242 |
atggcatattccttacagaagccttt |
267 |
Q |
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| | ||||||||||||| || ||||| |
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| T |
8807287 |
acgacatattccttacaaaatccttt |
8807312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 8843380 - 8843436
Alignment:
| Q |
211 |
tctagaagtccttgttgtgcttctgtttgacatggcatattccttacagaagccttt |
267 |
Q |
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|||||||| ||||| ||| ||||||| |||| ||||||||||||||||||| ||||| |
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| T |
8843380 |
tctagaaggccttgctgtccttctgtatgacgtggcatattccttacagaatccttt |
8843436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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