View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_high_20 (Length: 239)
Name: NF4905_high_20
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2796054 - 2795832
Alignment:
| Q |
1 |
ttcctgaaatgatcctatccattctcatctccatcacaatgattttttatcaatgagttaaaatgaacacatattttagaatatgaaaacataaaatatt |
100 |
Q |
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| T |
2796054 |
ttcctgaagtgatcctatccattctcatctccatcacaatgattttttatcaatgagttaaaatgaacacatattttagaatatgaaaacataaaatatt |
2795955 |
T |
|
| Q |
101 |
ttcacacactaaacaaactttaataatctcctagttcattttaaatgatatatatgtttaattaaagttgttttttgcaaaatnnnnnnngccaaatgaa |
200 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
2795954 |
ttcacacactaaacagactttaataatctccttgttcattttaaatgatatatatgtttaattaaagttgttttttgcaaaaaaaaaaaaggcaaatgaa |
2795855 |
T |
|
| Q |
201 |
ctttggatttttgtaaagtggtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2795854 |
ctttggatttttgtaaagtggtt |
2795832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 48440068 - 48440116
Alignment:
| Q |
56 |
agttaaaatgaacacatattttagaatatgaaaacataaaatattttcaca |
106 |
Q |
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| T |
48440068 |
agttaaaatgaacacatattttagaagatg--aacataaaatgttttcaca |
48440116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 11101420 - 11101372
Alignment:
| Q |
56 |
agttaaaatgaacacatattttagaatatgaaaacataaaatattttca |
104 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
11101420 |
agttgaaatgaacacatattttagaaattgaaaacatcaaatattttca |
11101372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 44651562 - 44651612
Alignment:
| Q |
56 |
agttaaaatgaacacatattttagaatatgaaaacataaaatattttcaca |
106 |
Q |
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||||||||||| |||||||||||||| || |||| ||||||| |||||||| |
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| T |
44651562 |
agttaaaatgagcacatattttagaaaataaaaatataaaatgttttcaca |
44651612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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