View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_high_4 (Length: 457)
Name: NF4905_high_4
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_high_4 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 37 - 457
Target Start/End: Original strand, 12233635 - 12234053
Alignment:
| Q |
37 |
tgtttgcattaggaatttaagaggctttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaag |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12233635 |
tgtttgcattaggaatttaagaggctttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaag |
12233734 |
T |
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| Q |
137 |
acaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttctcaagcaaaggaatatgcagcagat |
236 |
Q |
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| T |
12233735 |
acaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttctcaagcaaaggaatatgcagcagat |
12233834 |
T |
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| Q |
237 |
taaagtcctgaaggtaacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatagaagtgtctacatcatggtttcaacac |
336 |
Q |
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| T |
12233835 |
taaagtcctgaagataacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatagaagtgtctacatcatggtttca--ac |
12233932 |
T |
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| Q |
337 |
acactgttgttggcatgatttaagtaacagatcttcaccagaaatataacaaactttacttcacaatcaaataatgcttactactaaacagaaagaaaat |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12233933 |
acactgttgttggcatgatttaagtaacagatcttcaccagaaatataacaaaccttacttaacaatcaaataatgcttactactaaacagaaagaaaat |
12234032 |
T |
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| Q |
437 |
acctagaatctttattgagaa |
457 |
Q |
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| T |
12234033 |
acctaaaatctttattgagaa |
12234053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 7540668 - 7540754
Alignment:
| Q |
62 |
tttgccaagtattggtgtataaagtttactaataaattttggaagttatcattattctccaaattcagaaagaagacaagaccattt |
148 |
Q |
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| T |
7540668 |
tttgacaagtattggtgcttaaagttttctaataaattttgggagttatcattatcctgcaaattcagaaggaaaaaaagactattt |
7540754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 52550512 - 52550439
Alignment:
| Q |
131 |
aagaagacaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
205 |
Q |
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| T |
52550512 |
aagaagacatcaccatttttctataatacaaattctgctgaagccttagtctaat-tttttaaatttcaatacaa |
52550439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 50672096 - 50672154
Alignment:
| Q |
146 |
tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
205 |
Q |
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| T |
50672096 |
tttttctataatacaaatcctgatgaaaccttagtctaa-atttttaaattttaatacaa |
50672154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 23591125 - 23591183
Alignment:
| Q |
146 |
tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
205 |
Q |
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| T |
23591125 |
tttttctataatacaaattctgatgaaaccttagtctaa-atttttaaattttaatacaa |
23591183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 23591015 - 23591059
Alignment:
| Q |
91 |
taataaattttggaagttatcattattctccaaattcagaaagaa |
135 |
Q |
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| T |
23591015 |
taataaattttgggagttatcattatcctgcaaattcagaaagaa |
23591059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 22785 - 22826
Alignment:
| Q |
94 |
taaattttggaagttatcattattctccaaattcagaaagaa |
135 |
Q |
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| T |
22785 |
taaattttgggagttatcattatcctacaaattcagaaagaa |
22826 |
T |
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