View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4905_high_7 (Length: 412)
Name: NF4905_high_7
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 7652375 - 7652760
Alignment:
| Q |
9 |
acatcatcaatactcaacttctcaacaccgagtttcttaaaactcgaatcaacagctgatttcctcacactgccgtaaacttgaatacattcgcgaagat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7652375 |
acatcaccaatactcaacttctcaacaccgagtttcttaaaactcgaatcaacagctgatttcctcacactgccgtaaacttgaatacattcgcgaagat |
7652474 |
T |
|
| Q |
109 |
atccagatgatatcattctatcagcaatacaccgaagatcggtgactgcttcagaaggtatcagatctacctcacgtatactactagctgaacggtaagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7652475 |
atccagatgatatcattctatcagcaatacaccgaagatcggtgactgcttcagaaggtatcagatctatctcacgtatactactagctgaacggtaagt |
7652574 |
T |
|
| Q |
209 |
ggaagcagtagtaacagtagtagcagcggaacaattactatcaaaacgatgaagtttgtcatcaacgtcaaccccatcatcctcgtagctgttatcttct |
308 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
7652575 |
ggaagcagtagtaacagtagtagcaacggaacaattactatcaaaacgatgaagtttgtcatcaacgtcaaccccatcgtcgtcgtagctgttatcttct |
7652674 |
T |
|
| Q |
309 |
tcgtcttgtagtttagaagacgaagaagataagtaagtatcatcttcaagagaaggatcaatttggttgttggtgtgtgagataag |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7652675 |
tcgtcttgtagtttagaagacgaagaagataagtaagtatcatcttcaagagaaggatcaatttggttgttggtgtgtgagataag |
7652760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University