View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4905_low_1 (Length: 639)

Name: NF4905_low_1
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4905_low_1
NF4905_low_1
[»] chr7 (4 HSPs)
chr7 (44-620)||(27272926-27273508)
chr7 (238-277)||(9332985-9333024)
chr7 (44-93)||(27282622-27282671)
chr7 (1-29)||(27272884-27272912)
[»] chr6 (1 HSPs)
chr6 (158-619)||(13550309-13550758)
[»] chr2 (2 HSPs)
chr2 (346-522)||(24867920-24868092)
chr2 (97-196)||(24863595-24863692)
[»] chr3 (3 HSPs)
chr3 (93-316)||(6077706-6077932)
chr3 (238-277)||(22157926-22157965)
chr3 (133-190)||(9765844-9765900)
[»] scaffold0061 (2 HSPs)
scaffold0061 (501-620)||(290-412)
scaffold0061 (501-620)||(5801-5923)
[»] chr5 (2 HSPs)
chr5 (424-484)||(32724021-32724081)
chr5 (97-278)||(21114784-21114959)
[»] chr8 (1 HSPs)
chr8 (97-278)||(43651575-43651750)
[»] chr4 (2 HSPs)
chr4 (228-276)||(7807628-7807676)
chr4 (93-208)||(39482402-39482516)


Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 44 - 620
Target Start/End: Original strand, 27272926 - 27273508
Alignment:
Q  44 aattgtgccttgtttgattttctcaaacattttcattatttctttgagagatgataaaagggataagaaagatagaaacttggtgaaaccctgtcatgct 143  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  27272926 aattgtgccttgtttgattttctcaagcattttcattattcctttgagagatgataaaagggataagaaagatagaaacttgatgaaaccctgtcatgtt 27273025  T
Q  144 ttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggnnnnnnnn-----gtcctgagaagaaaa 238  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||    
T  27273026 ttcgtctttatctgtggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggtttttttttttttgtcctgagaagaaaa 27273125  T
Q  239 acaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagagtgaaactgccataaatcaccctgttaaagcatactcatgtgann 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27273126 acaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagagtgaaactgccataaatcaccctgttaaagcatactcatgtgatt 27273225  T
Q  339 nnnnnnncaaaagaagattcatgaggttaacaaaataagatnnnnnnnntgtgcattaatgaatactacaattgaacagtttgaattgaaaaggacattt 438  Q
           ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27273226 tttttt-caaaagaagattcatgaggttaacaaaataagataaaaaaaa-gtgcattaatgaatactacaattgaacagtttgaattgaaaaggacattt 27273323  T
Q  439 agatgaaaaatccaatctaaatttaggaaatttaaaatagtctcatagtagaagaagaaagcaaagaaaaagagttacatcggtatatcattatagagtt 538  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  27273324 agatgaaaaatccaatctaaattcaggaaatttaaaatagtctcatagtagaagaagaaagcaaagaaaaagaattacatcggtatatcattatagagtg 27273423  T
Q  539 cgacgccatgttgttaactgaaactaaaatacaaagaactctacttc---gtcgatagttattcgttgtagttgttgggagcaag 620  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||    
T  27273424 cgacgtcatgttgttaactaaaactaaaatacaaagaactctacttcgatgttgatagttattcgttgtagttgttgggagcaag 27273508  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 9332985 - 9333024
Alignment:
Q  238 aacaatagagccgctcaatcctcaattctcattagcaatt 277  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  9332985 aacaatagaaccgctcattcctcaattctcattagcaatt 9333024  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 27282622 - 27282671
Alignment:
Q  44 aattgtgccttgtttgattttctcaaacattttcattatttctttgagag 93  Q
    |||||| |||||||||  |||||| ||||||||||||||| |||||||||    
T  27282622 aattgtaccttgtttgggtttctctaacattttcattattcctttgagag 27282671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27272884 - 27272912
Alignment:
Q  1 agggggtcgggttacattataatggacca 29  Q
    |||||||||||||||||||||||||||||    
T  27272884 agggggtcgggttacattataatggacca 27272912  T

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Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 158 - 619
Target Start/End: Original strand, 13550309 - 13550758
Alignment:
Q  158 tggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggnnnnnnnngtcctgagaagaaaaacaatagagccgctcaatc 257  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||        |||||||      |||||||||| || |||||||    
T  13550309 tggatgaaacgtctcttgtaattgtaatttggaacgtccctgctcccattttcattggttttttt-gtcctga------aaacaatagaacccctcaatc 13550401  T
Q  258 ctcaattctcattagcaattgtaaaatagaaagagagtga--aactgccataaatcaccctgttaaagcatactcatgtgannnnnnnnncaaaagaaga 355  Q
    |||||||||||||||||||| |  ||||||||||||| ||  ||||| ||||||||||||||||||| |||||||||||||          |||||||||    
T  13550402 ctcaattctcattagcaattttccaatagaaagagagagagaaactgtcataaatcaccctgttaaaacatactcatgtgatttttttg--aaaagaaga 13550499  T
Q  356 ttcatgaggttaacaaaataagatnnnnnnnntgtgcattaatgaatactacaattgaacagtttgaattgaaaagg-acatttagatgaaaaa-tccaa 453  Q
    ||||||| ||||| ||||||||||         ||||||||||| ||||| ||  ||     ||||||||||||||| |||||||||| ||||| || ||    
T  13550500 ttcatgaagttaataaaataagataaaaa----gtgcattaatggatactgcacctg-----tttgaattgaaaagggacatttagataaaaaaatcaaa 13550590  T
Q  454 tctaaatttaggaaatttaaaatagtctcatagtagaagaagaaagcaaagaaaaagagttacatcggtatatc--attatagagttcgacgccatgttg 551  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | | || | || | |  |||||||    
T  13550591 tctaaattttggaaatttaaaatagtctcatagtagaagaagaaagcaaagaaaaagagttacataggtatatctaaatttaaaatt-gtc-tcatgttg 13550688  T
Q  552 ttaactgaaactaaaatacaaagaactctacttc---gtcgatagttattcgttgtagttgttgggagcaa 619  Q
    ||||||||||||||||||| ||||||||  ||||   ||| || ||||||| |||||||||||||||||||    
T  13550689 ttaactgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattc-ttgtagttgttgggagcaa 13550758  T

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Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 346 - 522
Target Start/End: Original strand, 24867920 - 24868092
Alignment:
Q  346 caaaagaagattcatgaggttaacaaaataagatnnnnnnnntgtgcattaatgaatactacaattgaacagtttgaattgaaaaggacatttagatgaa 445  Q
    ||||||||||||||||| ||||||||||||||||         ||||||||| ||||||||||  |  ||||||||||||||||||||||||||||||||    
T  24867920 caaaagaagattcatgaagttaacaaaataagataaaaa----gtgcattaacgaatactacacct--acagtttgaattgaaaaggacatttagatgaa 24868013  T
Q  446 aaatccaatctaaatttaggaaatttaaaatagtctcata--gtagaagaagaaagcaaagaaaaagagttacatcggt 522  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||    
T  24868014 aaatccaatctaaatttaggaaacttaaaatagtctcatagtgtagaagaagaaaacaaagaaaaagagatacatcggt 24868092  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 24863595 - 24863692
Alignment:
Q  97 ataaaagggataagaaagatagaaacttggtgaaaccctgtcatgctttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttggaacgtcc 196  Q
    ||||||| ||||||||| |||||   ||||||||||| ||||||| |||| ||| ||| | ||||| ||| ||||||||||||||| |||||| ||||||    
T  24863595 ataaaagagataagaaatatagatctttggtgaaacc-tgtcatg-tttcctctctatctttggattaaatgtctcttgcaattgttatttgggacgtcc 24863692  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 6077932 - 6077706
Alignment:
Q  93 gatgataaaagggataagaaagatagaaacttggtgaaaccctgtcatgctttcgtctttatttgtggatgaaacgt--ctcttgcaattgtaatttgga 190  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||  |||||||||||||||||||||    
T  6077932 gatgataaaagggaaaagaaatatagaaacttggtgaaaccctgtcatgctttcctctttatctttggatgaaacgtctctcttgcaattgtaatttgga 6077833  T
Q  191 acgtccatactcccattttcattgg------nnnnnnnngtcctgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattgtaaaat 284  Q
    ||||     ||| ||||||| || |              | ||||||||||||||||||||| | | ||||||||||||||||||| |||||||| ||||    
T  6077832 acgt-----ctctcattttctttcgtttttttgttttttgccctgagaagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaat 6077738  T
Q  285 agaaagagagtgaaactgccataaatcaccct 316  Q
    |||||||||| |||||||||||||||||||||    
T  6077737 agaaagagagagaaactgccataaatcaccct 6077706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 22157926 - 22157965
Alignment:
Q  238 aacaatagagccgctcaatcctcaattctcattagcaatt 277  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  22157926 aacaatagaaccgctcattcctcaattctcattagcaatt 22157965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 9765900 - 9765844
Alignment:
Q  133 cctgtcatgctttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttgga 190  Q
    ||||||||| |||| ||| ||| | ||||||||| |||||||||||||||||||||||    
T  9765900 cctgtcatg-tttcctctctatctttggatgaaatgtctcttgcaattgtaatttgga 9765844  T

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Target: scaffold0061 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 501 - 620
Target Start/End: Original strand, 290 - 412
Alignment:
Q  501 aaagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctactt---cgtcgatagttat 597  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    ||| ||||||||    
T  290 aaagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttat 389  T
Q  598 tcgttgtagttgttgggagcaag 620  Q
    |||||||||||||||||||||||    
T  390 tcgttgtagttgttgggagcaag 412  T

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Target: scaffold0061; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 501 - 620
Target Start/End: Original strand, 5801 - 5923
Alignment:
Q  501 aaagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctactt---cgtcgatagttat 597  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    ||| ||||||||    
T  5801 aaagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttat 5900  T
Q  598 tcgttgtagttgttgggagcaag 620  Q
    |||||||||||||||||||||||    
T  5901 tcgttgtagttgttgggagcaag 5923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 32724021 - 32724081
Alignment:
Q  424 ttgaaaaggacatttagatgaaaaatccaatctaaatttaggaaatttaaaatagtctcat 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32724021 ttgaaaaggacatttagatgaaaaatccaatctaaatttaggaaacttaaaatagtctcat 32724081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 21114784 - 21114959
Alignment:
Q  97 ataaaagggataagaaagatagaaacttggtgaaaccctgtcatgctttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttggaacgtcc 196  Q
    ||||||| ||||||||| |||||   | ||||||||| ||||||| |||| ||| ||| | ||||||||| |||||||||||||||||||||| ||||||    
T  21114784 ataaaagagataagaaatatagatcttcggtgaaacc-tgtcatg-tttcctctctatctttggatgaaatgtctcttgcaattgtaatttgg-acgtcc 21114880  T
Q  197 atactcccattttcattggnnnnnnnngtcctgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattg 278  Q
     | ||||||||||| |||         ||| ||| ||||||||||||||| | | |||||||||||||||||||||||||||    
T  21114881 ctgctcccattttc-ttg--attctttgtcttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattg 21114959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 43651575 - 43651750
Alignment:
Q  97 ataaaagggataagaaagatagaaacttggtgaaaccctgtcatgctttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttggaacgtcc 196  Q
    ||||||| ||||||||| |||||   | ||||||||| ||||||| |||| ||| ||| | ||||||||| |||||||||||||||||||||| ||||||    
T  43651575 ataaaagagataagaaatatagatcttcggtgaaacc-tgtcatg-tttcctctctatctttggatgaaatgtctcttgcaattgtaatttgg-acgtcc 43651671  T
Q  197 atactcccattttcattggnnnnnnnngtcctgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattg 278  Q
     | ||||||||||| |||         ||| ||| ||||||||||||||| | | |||||||||||||||||||||||||||    
T  43651672 ctgctcccattttc-ttg--attctttgtcttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattg 43651750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 7807628 - 7807676
Alignment:
Q  228 tgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaat 276  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  7807628 tgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaat 7807676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 39482402 - 39482516
Alignment:
Q  93 gatgataaaagggataagaaagatagaaacttggtgaaaccctgtcatgctttcgtctttatttgtggatgaaacgtctcttgcaattgtaatttggaac 192  Q
    ||||||||||| ||||| ||| || || | ||||| ||||||||||||| || | | | ||  | | ||||||| ||||||| |||||||||||||||||    
T  39482402 gatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatttggaac 39482500  T
Q  193 gtccatactcccattt 208  Q
    |||| | |||||||||    
T  39482501 gtccctgctcccattt 39482516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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