View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_10 (Length: 318)
Name: NF4905_low_10
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 10397002 - 10396734
Alignment:
| Q |
20 |
tagtacaatcctggagaaggtcaaattggacgaaattgctactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaa |
119 |
Q |
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| T |
10397002 |
tagtacaatcctggagaaggtcgaattgaacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaa |
10396903 |
T |
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| Q |
120 |
gaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccct |
219 |
Q |
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| T |
10396902 |
gaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccct |
10396803 |
T |
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| Q |
220 |
gcccaatgtgtcgttcccaaattcaatgatcacattttaaaataataatttgatgtgtttgcagaataa |
288 |
Q |
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| T |
10396802 |
gcccaatgtgtcgttcccaaattcaatgatcacaatataaaataataatttgatgtgtttgcagaataa |
10396734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 10407222 - 10406954
Alignment:
| Q |
20 |
tagtacaatcctggagaaggtcaaattggacgaaattgctactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaa |
119 |
Q |
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| T |
10407222 |
tagtacaatcctggagaaggtcgaattggacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaa |
10407123 |
T |
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| Q |
120 |
gaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccct |
219 |
Q |
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| T |
10407122 |
gaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgaattgtgacattaccaatccacaatatccct |
10407023 |
T |
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| Q |
220 |
gcccaatgtgtcgttcccaaattcaatgatcacattttaaaataataatttgatgtgtttgcagaataa |
288 |
Q |
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| T |
10407022 |
gcccaatgtgtcgttcccaaattcaatgatcacaatataaaataataatttgatgtgtttgcagaataa |
10406954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 10381479 - 10381345
Alignment:
| Q |
128 |
cattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccctgcccaatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||| || ||| ||||||| ||| ||||| ||||| | |||| |||||||| || |
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| T |
10381479 |
cattgttcgtaccaagtgcatgcatgttttccatcaacaatgtgttgctcggtggcttatgcagtgttgcattagcaatcgattatattcctgcccattg |
10381380 |
T |
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| Q |
228 |
tgtcgttcccaaattcaatgatcacattttaaaat |
262 |
Q |
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| T |
10381379 |
tgtcgttccgaaattcaatgatcatattttcaaat |
10381345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 10429226 - 10429132
Alignment:
| Q |
79 |
aatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgtt |
173 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||||| |||| ||||| ||||||||| |
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| T |
10429226 |
aatgttcaatttgtttggaggaattttgtgatggatcagaagtaccacacattattcgtaccaagtgtatgcatttttttcatgaacattgtgtt |
10429132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 10396730 - 10396687
Alignment:
| Q |
266 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
309 |
Q |
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| T |
10396730 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
10396687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 10406950 - 10406907
Alignment:
| Q |
266 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
309 |
Q |
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| T |
10406950 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
10406907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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