View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_11 (Length: 296)
Name: NF4905_low_11
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 14083475 - 14083204
Alignment:
| Q |
18 |
cacagaaaataaatagagtaaacctacgatatagttttgtaaggattcaaatatgaaggtcataatttgtaacggattactcaggttgttagaagaataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14083475 |
cacagaaaataaatagagtaaacctacgatatagttctgtaaggattcaaatatgaaggtcataatttgtaacggattactcaggttgtaagaagaataa |
14083376 |
T |
|
| Q |
118 |
agagaataattgaacagaaatcaaaagagccaatcaacatcatatatcttaaaattggggttgggcttaactcagcccttacaaaaccggcttttaaagg |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14083375 |
agagaataattgaacagaaatcagaagagccaatcaacatcatatatcttaaaattggggttgggcttaactccgcccttacaaaaccggcttttaaagg |
14083276 |
T |
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| Q |
218 |
gtggcctgcctatcac-------ttataaacatatcgtcagacgttatctcatcaaatgtgagattcttatt |
282 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14083275 |
gtggcctgcctatcacttatcacttataaacatatcgtcagacgttatctcatcaaatgtgagattcttatt |
14083204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 14393503 - 14393232
Alignment:
| Q |
18 |
cacagaaaataaatagagtaaacctacgatatagttttgtaaggattcaaatatgaaggtcataatttgtaacggattactcaggttgttagaagaataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14393503 |
cacagaaaataaatagagtaaacctacgatatagttctgtaaggattcaaatatgaaggtcataatttgtaacggattactcaggttgtaagaagaataa |
14393404 |
T |
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| Q |
118 |
agagaataattgaacagaaatcaaaagagccaatcaacatcatatatcttaaaattggggttgggcttaactcagcccttacaaaaccggcttttaaagg |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14393403 |
agagaataattgaacagaaatcagaagagccaatcaacatcatatatcttaaaattggggttgggcttaactccgcccttacaaaaccggcttttaaagg |
14393304 |
T |
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| Q |
218 |
gtggcctgcctatcac-------ttataaacatatcgtcagacgttatctcatcaaatgtgagattcttatt |
282 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14393303 |
gtggcctgcctatcacttatcacttataaacatatcgtcagacgttatctcatcaaatgtgagattcttatt |
14393232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 81 - 274
Target Start/End: Original strand, 6865111 - 6865311
Alignment:
| Q |
81 |
aatttgtaacggattactcaggttgttag-------aagaataaagagaataattgaacagaaatcaaaagagccaatcaacatcatatatcttaaaatt |
173 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6865111 |
aatttgtaacagattactcaggttgttagaacttagaagaataaagagaataaatgaatagaaatcaaaagagctaatcaacatcatatatcttaaaatt |
6865210 |
T |
|
| Q |
174 |
ggggttgggcttaactcagcccttacaaaaccggcttttaaagggtggcctgcctatcacttataaacatatcgtcagacgttatctcatcaaatgtgag |
273 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6865211 |
tgggttgggcttaactcaacccttacaaaaccggcttttaaagggtggcctgcctatcacttataaacatatcgtcagacgttatctcatcaaatgtgag |
6865310 |
T |
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| Q |
274 |
a |
274 |
Q |
| |
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| |
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| T |
6865311 |
a |
6865311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 22975520 - 22975565
Alignment:
| Q |
164 |
tcttaaaattggggttgggcttaactcagcccttacaaaaccggctt |
210 |
Q |
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||||||| || ||||||||||||||||||||| |||||||||||||| |
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| T |
22975520 |
tcttaaattttgggttgggcttaactcagccc-tacaaaaccggctt |
22975565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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