View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_16 (Length: 279)
Name: NF4905_low_16
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 34019675 - 34019431
Alignment:
| Q |
19 |
attggatgttagtataaaattgttttgcaccgacaagcgtatatcccttaatgtgtagatatttacgagtgcataccgctctttcatcggttgaaaccgc |
118 |
Q |
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| T |
34019675 |
attggatgttagtataaaattgttttgcaccgacaagcgtatatcccttaatgtgtagatatttacgagtgcataccgctctttcgtcggttgaaaccgc |
34019576 |
T |
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| Q |
119 |
tgaaatgacaaacattaagagaaaactgatgataatttctacaactaaagactggccatttgatccaactggtacggttccaaaataagttttggacgtg |
218 |
Q |
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| T |
34019575 |
tgaaatgacaaacattaagagaaaactgatgatgatttctacaactaaagactggccatttgatccaactggtacggttccaaaataagttttggacgtg |
34019476 |
T |
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| Q |
219 |
acatcgaacatcagtgataatgttccacttgcaagcgttgatcct |
263 |
Q |
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| T |
34019475 |
acatcgaacattagtgataatgttccactcgcaagcgttgatcct |
34019431 |
T |
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Back To:
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 1703824 - 1703936
Alignment:
| Q |
93 |
accgctctttcatcggttgaaaccgctgaaatgacaaacattaagagaaaactgatgataatttctacaactaaagactggccatttgatccaactggta |
192 |
Q |
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| T |
1703824 |
accgctctatcatctgtagtaacagctgaaatgacaaacattaagagaaaactgataatgatttctaacactaaagattgacagtttgatccgaccggta |
1703923 |
T |
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| Q |
193 |
cggttccaaaata |
205 |
Q |
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| T |
1703924 |
cagttccgaaata |
1703936 |
T |
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