View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_17 (Length: 257)
Name: NF4905_low_17
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 52659365 - 52659479
Alignment:
| Q |
13 |
aatatcatagaaatcttcatctcttcttcctttcaaaaaacactacaatgacccacatatacaaaattgcacacaatttcacaacacacaaatttt-aaa |
111 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52659365 |
aatatcatagaaatattcatctcttcttcctttcaaaaaacactacaatgacccacatatacaaaattgcacacaatttcacaacacacaaattttaaaa |
52659464 |
T |
|
| Q |
112 |
aaatttcaaagatct |
126 |
Q |
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||| ||||||||||| |
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| T |
52659465 |
aaacttcaaagatct |
52659479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 28103148 - 28103053
Alignment:
| Q |
13 |
aatatcatagaaatcttcatctcttcttcctttcaaaaaac-actacaatgacccacatatacaaaattgcacacaatttcacaacacacaaattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28103148 |
aatatcatagaaatcttcatctcttcttcctttcaaaaaaatactacaatgacccacaggtacaaaattgcacacaatttcacaacacacaaattt |
28103053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 31711544 - 31711639
Alignment:
| Q |
13 |
aatatcatagaaatcttcatctcttcttcctttca-aaaaacactacaatgacccacatatacaaaattgcacacaatttcacaacacacaaattt |
107 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
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| T |
31711544 |
aatatcatagaaatcttcatctcttcttcctttcacaaaaatactacaatggcccactggtaaaaaattgcacacaatttcacaacacacaaattt |
31711639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 51401173 - 51401058
Alignment:
| Q |
13 |
aatatcatagaaatcttcatctcttcttcctttcaaaaaacactacaatgacccacatatacaaaattgcacacaatttcacaacacacaaattttaaaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
51401173 |
aatatcatagaaatcttcatatcttcttcctttcaaaaaacactacaatgacccacatatacaaaattgcacacaatttcacaacaca-aaaatttaaaa |
51401075 |
T |
|
| Q |
113 |
aatttcaaagatctgca |
129 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
51401074 |
aatatcaaagatctgca |
51401058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 51400993 - 51400950
Alignment:
| Q |
193 |
gaaaaagctcttacccttaattctgggtttaatttgagttgttg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
51400993 |
gaaaaagctcttacccttaattctgggtttaatttgaattgttg |
51400950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 7038002 - 7037907
Alignment:
| Q |
13 |
aatatcatagaaatcttcatctcttcttcctttcaaaaaac-actacaatgacccacatatacaaaattgcacacaatttcacaacacacaaattt |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7038002 |
aatatcatagaaatcttcgtctcttcttcctttcaaaaaaatactacaatgacccacaggtacaaaattgcacacaatttcacaacacacaaattt |
7037907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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