View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_18 (Length: 252)
Name: NF4905_low_18
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_18 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 8204 - 7989
Alignment:
| Q |
14 |
caagaacttcaataactatgctcattctcatacacaaattaacctcttccattacctattgttactttgctttcttctttcattttgtatcagattagaa |
113 |
Q |
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| T |
8204 |
caagaacttcaataactatgctcattctcatacacaaattaacctcttccattacctattgttg-------------tttcattttgtatcagattagaa |
8118 |
T |
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| Q |
114 |
gtaaacgttccaaaacaatattgaaagtttgtttaatataataaatactccattctccaactattgttgctgaagacannnnnnnnnaatctgttaacta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8117 |
gtaaacgttccaaaacaatattgaaagtttgtttaatataataaatactccattctccaactattgttgctgaagacattttttttt-atctgttaacta |
8019 |
T |
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| Q |
214 |
ctctatagctgtcacctcttttagaataat |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8018 |
ctctatagctgtcacctcttttagaataat |
7989 |
T |
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