View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_19 (Length: 243)
Name: NF4905_low_19
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 12234165 - 12234343
Alignment:
| Q |
1 |
tcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctca |
100 |
Q |
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| T |
12234165 |
tcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctca |
12234264 |
T |
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| Q |
101 |
ttttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctc |
179 |
Q |
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| T |
12234265 |
ttttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaatatggtaattctc |
12234343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 7541301 - 7541470
Alignment:
| Q |
30 |
agattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattt |
129 |
Q |
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| T |
7541301 |
agattcaatcttctcaatttcttctgaggagagtttcaaattaatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattc |
7541400 |
T |
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| Q |
130 |
actgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaattttt |
199 |
Q |
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| T |
7541401 |
actgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttt |
7541470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 11998587 - 11998774
Alignment:
| Q |
1 |
tcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctca |
100 |
Q |
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| T |
11998587 |
tcaaccagatttgtggcagttgcgattgcatactcaattttctaaatttcttctgaggagagctttataataatatcctttgactttaaagcatttctca |
11998686 |
T |
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| Q |
101 |
ttttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatat-ggtaattctcagcttctt |
187 |
Q |
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|||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
11998687 |
ttttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgggaaattctcagcttctt |
11998774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 14702486 - 14702645
Alignment:
| Q |
32 |
attcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatttac |
131 |
Q |
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| T |
14702486 |
attcaatcttcttaatttccaatgaggtgagctttatattaatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcac |
14702585 |
T |
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| Q |
132 |
tgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaat |
191 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14702586 |
cactttggccttccttaggaatttcatgtcttcaatatggtaattctcagcttcttgaat |
14702645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 12259693 - 12259499
Alignment:
| Q |
6 |
caaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtc---ttcttcaaagcatttctcatt |
102 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||| |
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| T |
12259693 |
caaatttgtggccactgcaattgcagattcaatcttctcaatttcttctgtggagagctttacgttaatatcctcctcattctttaaagcatttctcatt |
12259594 |
T |
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| Q |
103 |
ttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaattt |
197 |
Q |
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||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||| | |||| |||||||||||||||||| |||||||| |
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| T |
12259593 |
ttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtcgtaaatacagtaattctcagcttcttgtattaattt |
12259499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 12246500 - 12246332
Alignment:
| Q |
29 |
cagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatt |
128 |
Q |
| |
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||||||| |||||||| ||||||| ||| |||||||| | || ||||||| | ||||| |||||||||| |||||||||||||||| |||||| ||||| |
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| T |
12246500 |
cagattcgatcttctcgatttcttgtgaagagagcttcacatcaatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcatt |
12246401 |
T |
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| Q |
129 |
tactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaattt |
197 |
Q |
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| T |
12246400 |
cactgctttggccttccttaggaatctctggtcttcaatatgaaaattctcagcctctttaattaattt |
12246332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 16663025 - 16662912
Alignment:
| Q |
90 |
agcatttctcattttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttga |
189 |
Q |
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|||||| |||| |||||||||| || ||| |||||||| | | | || ||||||||||||||||||| |||||| |||||| | || |||||||||| |
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| T |
16663025 |
agcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttga |
16662926 |
T |
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| Q |
190 |
attaatttttcaat |
203 |
Q |
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| T |
16662925 |
atcaatttttcaat |
16662912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 52550051 - 52549825
Alignment:
| Q |
1 |
tcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctca |
100 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||| | |
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| T |
52550051 |
tcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatttcttctgaggagagcttcaaattaatatcctctttctttaaagcatttctga |
52549952 |
T |
|
| Q |
101 |
ttttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttc |
200 |
Q |
| |
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|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52549951 |
ttttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaatttttt |
52549852 |
T |
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| Q |
201 |
aatctcttcagtttttaacctttcttt |
227 |
Q |
| |
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||| || ||| || ||||||||||| |
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| T |
52549851 |
aatgtcctcacttgacaacctttcttt |
52549825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 8646067 - 8646114
Alignment:
| Q |
139 |
gccttccttaggaatttcttgtcttcaatatggtaattctcagcttct |
186 |
Q |
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| T |
8646067 |
gccttccttaggaatttctcatcttcaatacggtaattttcagcttct |
8646114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 6788706 - 6788759
Alignment:
| Q |
146 |
ttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaattttt |
199 |
Q |
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||||||||||||| ||||||| |||||||||||||||||| ||| ||||||| |
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| T |
6788706 |
ttaggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttt |
6788759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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