View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_23 (Length: 236)
Name: NF4905_low_23
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 25247471 - 25247672
Alignment:
| Q |
18 |
cacagagttaaaaggagcaacaggtatatcattgccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtc |
117 |
Q |
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| T |
25247471 |
cacagagttaaaaggagcaacaggtatatcattgccgtaaacaaacggagaccaaacgtcatactcattgtgaccttggtaagaaggcggtatggcggtc |
25247570 |
T |
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| Q |
118 |
cggtaagtaatctgttggctccggtaggtcatgtaagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttactt |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25247571 |
cggagagtaatctgttggctccggtaggtcatgtaagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttactt |
25247670 |
T |
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| Q |
218 |
ga |
219 |
Q |
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|| |
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| T |
25247671 |
ga |
25247672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 43076721 - 43076887
Alignment:
| Q |
52 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
151 |
Q |
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| T |
43076721 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43076820 |
T |
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| Q |
152 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttacttg |
218 |
Q |
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| T |
43076821 |
aagaatcaagacgatcgtagtagataccaattttatcgttgggattacgtgaagaaactgtgacttg |
43076887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 43086948 - 43087093
Alignment:
| Q |
52 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
151 |
Q |
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||||||||||||||||||||||| ||| ||| |||||||| || || || || ||||||||||| | ||||||||| |||||||||||||| || | || |
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| T |
43086948 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43087047 |
T |
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| Q |
152 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatt |
197 |
Q |
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||| ||| |||||||||||||| | |||||| |||| ||||||||| |
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| T |
43087048 |
aagaatcaagacgatcgtagtagataccgattttattgttgggatt |
43087093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 43090619 - 43090764
Alignment:
| Q |
52 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
151 |
Q |
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||||||||||||||||||||||| ||| ||| |||||||| || || || || ||||||||||| | ||||||||| |||||||||||||| || | || |
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| T |
43090619 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43090718 |
T |
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| Q |
152 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatt |
197 |
Q |
| |
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||| ||| |||||||||||||| | |||||| |||| ||||||||| |
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| T |
43090719 |
aagaatcaagacgatcgtagtagataccgattttattgttgggatt |
43090764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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