View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4905_low_24 (Length: 223)

Name: NF4905_low_24
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4905_low_24
NF4905_low_24
[»] chr2 (1 HSPs)
chr2 (19-209)||(37785743-37785929)
[»] chr3 (2 HSPs)
chr3 (19-208)||(54873094-54873294)
chr3 (19-111)||(55430288-55430380)
[»] chr6 (1 HSPs)
chr6 (19-208)||(7020242-7020442)
[»] chr8 (1 HSPs)
chr8 (19-111)||(15919421-15919513)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 37785743 - 37785929
Alignment:
Q  19 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattattagtgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37785743 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattattagtgat 37785842  T
Q  119 acctcgtttaggaataaaactacttgataagactatttaaatgaggtctaatcctctccaccaacatcttgaaaataattttaagaataat 209  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  37785843 acctcgtttaggaataaaactac----taagactatttaaatgaggtctaatcctccccaccaacaccttgaaaataattttaagcataat 37785929  T

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Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 54873294 - 54873094
Alignment:
Q  19 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattattagtgat 118  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||| |||||| |||  |    
T  54873294 ctttttcaaaatcaattttgaacaaaagataaccttttttccctttcttcttattcatgttatgaactatttcatgtacgataataacattatcagtcgt 54873195  T
Q  119 acctcgtttaggaataaaactact-----------tgataagactatttaaatgaggtctaatcctctccaccaacatcttgaaaataattttaagaata 207  Q
     | |||||||||||||||||||||           ||||||| |||||||||||||||||||||||| |||||| || |||  ||||||||||||| |||    
T  54873194 gcttcgtttaggaataaaactactttgaaaagggctgataaggctatttaaatgaggtctaatcctccccaccagcaccttagaaataattttaagcata 54873095  T
Q  208 a 208  Q
    |    
T  54873094 a 54873094  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 55430288 - 55430380
Alignment:
Q  19 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattat 111  Q
    ||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  55430288 ctttttcaaaatcaattttgaacaaaagttaaccttttttccctttcttcttattcatgctatgaactatttcctctgcgataatagcattat 55430380  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 7020442 - 7020242
Alignment:
Q  19 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattattagtgat 118  Q
    ||||| |||| ||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||  |||||||||||| |||||| |||  |    
T  7020442 ctttttcaaagtcaattttgaacaaaagataaccttttttccctttctttttatttatgctatgaactatttcgtgtgcgataataacattatcagtcgt 7020343  T
Q  119 acctcgtttaggaataaaactact-----------tgataagactatttaaatgaggtctaatcctctccaccaacatcttgaaaataattttaagaata 207  Q
     |||||||||||||||||||||||           |||||||||||||||||||||||||||||||| |||| | || |||  ||||||||||||| |||    
T  7020342 gcctcgtttaggaataaaactactttgaaaagggctgataagactatttaaatgaggtctaatcctccccactagcaccttagaaataattttaagcata 7020243  T
Q  208 a 208  Q
    |    
T  7020242 a 7020242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 15919421 - 15919513
Alignment:
Q  19 cttttacaaaatcaattttgaacataagataacctttttcccctttcttcttattcatgctatgaactattttatgtgcgataatagcattat 111  Q
    ||||| |||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||  | |||||||||| ||||||    
T  15919421 ctttttcaaaatcaattttgaacaaaatataaccgtttttccctttcttcttattcatgctatgaactatttcctatgcgataataacattat 15919513  T

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