View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_25 (Length: 209)
Name: NF4905_low_25
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 24724164 - 24724337
Alignment:
| Q |
17 |
aatatctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724164 |
aatatctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaact |
24724263 |
T |
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| Q |
117 |
agttttaaccaagcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaa |
190 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24724264 |
agttttaaccaagcaaatagttttgtttcagggaaaggattaaggcaatacaatcctatcagctttgtggctaa |
24724337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 24732876 - 24733049
Alignment:
| Q |
17 |
aatatctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaact |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
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| T |
24732876 |
aatatctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagctaaggtgcaagactgcttctgaagct |
24732975 |
T |
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| Q |
117 |
agttttaaccaagcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaa |
190 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
24732976 |
agttttaaccaagcaactagttttgtttccggcaaaggattaaggcaataccatcctatcagctttgttgctaa |
24733049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 24693427 - 24693600
Alignment:
| Q |
17 |
aatatctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaact |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| || |
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| T |
24693427 |
aatatctttacaatcacaaagcaataaagattgttacgtgtatagcgatatgagctctggttcaggagttaagctaaggtgcaagtctgattctgaagct |
24693526 |
T |
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| Q |
117 |
agttttaaccaagcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaa |
190 |
Q |
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||||||||||||||| | ||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
24693527 |
agttttaaccaagcagcaagtttcgtttccgggaaaggattaaggcaataccatcctatcagctttgtggctaa |
24693600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 24748047 - 24748217
Alignment:
| Q |
20 |
atctttagaatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||| |||||| | ||| |
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| T |
24748047 |
atctttagaatcacaaagcaataaagattgttacgtgcatagtgatatgagcgctggttcaagagttaagctcagatgcaagtctggatctgaagcaagt |
24748146 |
T |
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| Q |
120 |
tttaaccaagcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaa |
190 |
Q |
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|||||||||| ||| ||||| ||||| ||||||||||||||||||||| |||| | ||| ||| ||||||| |
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| T |
24748147 |
tttaaccaagaaacaagtttcgtttccgggaaaggattaaggcaataccatcctaccagttttttggctaa |
24748217 |
T |
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