View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4905_low_6 (Length: 442)
Name: NF4905_low_6
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 38486732 - 38486465
Alignment:
| Q |
19 |
aatccgatgagagcaaaacttcatgaaggagatgcaccaaatacatatgtgtgattttcttgacaatggtaagaaaatccatctatataaagatggtggg |
118 |
Q |
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| T |
38486732 |
aatccgatgagagtaaaacttcatgaaggagatgcatcaaatacatatgtgtgattttcttgataatggtaagaaaatccatctatataaagatggtgag |
38486633 |
T |
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| Q |
119 |
agnnnnnnncttacaaaataaaaatggtgagagttggtttttaacttgctcgctcgtattgtactcttttttaattagtaaatttatttgtactctttac |
218 |
Q |
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| T |
38486632 |
agtttttttcttacaaaataaaaatggtgagagttggtttctaacttgctcg----tattgtact-ttttttaattagtaaatttatttgtactctttac |
38486538 |
T |
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| Q |
219 |
ctcgatgttatatttcctccaaaaactaaaacaccaatgtatagatattttatggggtacaatacaatatata |
291 |
Q |
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| T |
38486537 |
ctcgatgttatatttcctccaaaaactaaaacaccaatgtatagatattttatggggtacaatacaatatata |
38486465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 38486129 - 38486099
Alignment:
| Q |
289 |
ataaagaatagtattataatttattaccgac |
319 |
Q |
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| T |
38486129 |
ataaagaatagtattataatttattaccgac |
38486099 |
T |
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