View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4905_low_8 (Length: 381)
Name: NF4905_low_8
Description: NF4905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4905_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 36151290 - 36151640
Alignment:
| Q |
18 |
ttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36151290 |
ttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcag |
36151389 |
T |
|
| Q |
118 |
tcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36151390 |
tcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaa |
36151489 |
T |
|
| Q |
218 |
ggctccagctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggggctggtagtgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36151490 |
ggctccagctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgat |
36151589 |
T |
|
| Q |
318 |
gatggtgatggcaaggatttacctgctgatgtttctgctgcagggtctgtg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36151590 |
gatggtgatggcaaggatttacctgctgatatttctgctgcagggtctgtg |
36151640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 36154676 - 36155026
Alignment:
| Q |
18 |
ttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154676 |
ttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcag |
36154775 |
T |
|
| Q |
118 |
tcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154776 |
tcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaa |
36154875 |
T |
|
| Q |
218 |
ggctccagctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggggctggtagtgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36154876 |
ggctccagctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgat |
36154975 |
T |
|
| Q |
318 |
gatggtgatggcaaggatttacctgctgatgtttctgctgcagggtctgtg |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154976 |
gatggtgatggtaaggatttacctgctgatgtttctgctgcagggtctgtg |
36155026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 5273798 - 5274006
Alignment:
| Q |
18 |
ttaaccaaccctgttcaaacacaagccggtgatgatgcta---ggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggag |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | |||| ||||| || || || |||| ||| || || || || || ||| | || || |
|
|
| T |
5273798 |
ttaaccaacccggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaaccacttctggcggtagccatgtcagcatgacaactggca |
5273897 |
T |
|
| Q |
115 |
cagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggc |
214 |
Q |
| |
|
| || ||||| |||||||| || || ||||| || |||| |||||| ||||| ||||||||||| ||||| ||| | |||||||||||||| ||||| || |
|
|
| T |
5273898 |
cggttaatgcaaccgttactggaacagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatcttgtgcttcctgc |
5273997 |
T |
|
| Q |
215 |
taaggctcc |
223 |
Q |
| |
|
||| ||||| |
|
|
| T |
5273998 |
taaagctcc |
5274006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University